Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY51277 | Canola | nucleus | 81.14 | 85.33 |
| CDY50792 | Canola | nucleus | 80.88 | 85.05 |
| Bra002693.1-P | Field mustard | nucleus | 80.88 | 85.05 |
| Bra002694.1-P | Field mustard | nucleus | 79.33 | 83.42 |
| CDY11846 | Canola | nucleus | 50.65 | 82.35 |
| CDY02772 | Canola | nucleus | 77.52 | 81.97 |
| Bra020409.1-P | Field mustard | nucleus | 66.93 | 81.45 |
| CDY32744 | Canola | nucleus | 76.74 | 81.15 |
| Bra006798.1-P | Field mustard | nucleus | 64.08 | 81.05 |
| CDX88643 | Canola | nucleus | 49.61 | 80.67 |
| Bra006800.1-P | Field mustard | cytosol | 33.33 | 79.63 |
| CDX88641 | Canola | nucleus | 25.06 | 79.51 |
| VIT_11s0037g00610.t01 | Wine grape | nucleus | 43.93 | 36.25 |
| Solyc07g005910.2.1 | Tomato | nucleus | 39.53 | 33.77 |
| PGSC0003DMT400023950 | Potato | nucleus | 38.76 | 33.71 |
| PGSC0003DMT400028965 | Potato | nucleus | 39.28 | 33.55 |
| KRH55008 | Soybean | cytosol | 13.7 | 32.92 |
| AT2G24140.2 | Thale cress | nucleus | 26.61 | 31.79 |
| AT4G30830.1 | Thale cress | nucleus | 29.2 | 31.13 |
| KRH63109 | Soybean | nucleus | 36.18 | 30.37 |
| KRH37764 | Soybean | nucleus | 35.66 | 30.13 |
| KRH72337 | Soybean | nucleus | 36.43 | 30.06 |
| KRH03013 | Soybean | nucleus | 36.69 | 29.96 |
| KRH12784 | Soybean | nucleus | 34.11 | 28.95 |
| Solyc11g020850.1.1 | Tomato | nucleus | 37.98 | 28.0 |
| TraesCS5B01G405000.1 | Wheat | nucleus | 20.93 | 21.49 |
| TraesCS5A01G400200.1 | Wheat | nucleus | 20.93 | 21.37 |
| TraesCS5D01G410200.1 | Wheat | nucleus | 20.67 | 21.11 |
| Os08t0269000-01 | Rice | cytosol, golgi, nucleus | 15.5 | 20.69 |
| Zm00001d024102_P002 | Maize | nucleus | 17.83 | 19.49 |
| TraesCS7D01G282800.1 | Wheat | nucleus | 21.71 | 19.27 |
| TraesCS7B01G199800.1 | Wheat | nucleus | 21.45 | 18.74 |
| TraesCS7A01G285400.1 | Wheat | nucleus | 21.19 | 18.51 |
| Os08t0442350-01 | Rice | nucleus | 23.77 | 18.47 |
| HORVU5Hr1G097200.5 | Barley | cytosol | 20.16 | 18.22 |
| GSMUA_Achr10P... | Banana | nucleus | 22.22 | 17.84 |
| OQU80230 | Sorghum | cytosol | 17.83 | 17.25 |
| OQU80548 | Sorghum | nucleus | 23.26 | 17.05 |
| AT3G54740.3 | Thale cress | cytosol, nucleus, peroxisome | 19.12 | 16.89 |
| AT5G06560.1 | Thale cress | nucleus | 21.96 | 16.41 |
| Solyc12g009900.1.1 | Tomato | cytosol | 24.81 | 15.07 |
| PGSC0003DMT400020469 | Potato | cytosol | 25.84 | 14.41 |
| AT4G13160.1 | Thale cress | endoplasmic reticulum | 10.08 | 13.83 |
| AT3G11850.2 | Thale cress | nucleus | 17.57 | 13.49 |
| Zm00001d032145_P001 | Maize | nucleus | 20.67 | 12.92 |
| AT1G04890.1 | Thale cress | mitochondrion | 12.4 | 11.68 |
| AT1G18990.1 | Thale cress | endoplasmic reticulum, plasma membrane | 13.18 | 9.73 |
| AT4G13630.1 | Thale cress | extracellular, golgi | 13.7 | 9.31 |
| AT1G74830.1 | Thale cress | extracellular, golgi, vacuole | 12.4 | 8.86 |
| AT5G16720.1 | Thale cress | endoplasmic reticulum, golgi, vacuole | 14.73 | 8.44 |
| AT1G70750.1 | Thale cress | endoplasmic reticulum, golgi, mitochondrion | 13.95 | 7.21 |
| AT2G30690.2 | Thale cress | endoplasmic reticulum, plasma membrane, plastid | 10.85 | 5.53 |
| AT1G08800.1 | Thale cress | extracellular, vacuole | 12.14 | 4.22 |
Protein Annotations
| MapMan:35.1 | EntrezGene:835893 | ProteinID:AED96957.1 | ArrayExpress:AT5G57830 | EnsemblPlantsGene:AT5G57830 | RefSeq:AT5G57830 |
| TAIR:AT5G57830 | RefSeq:AT5G57830-TAIR-G | EnsemblPlants:AT5G57830.1 | TAIR:AT5G57830.1 | ncoils:Coil | UniProt:F4KDE6 |
| InterPro:GTD-bd | InterPro:IPR007656 | RefSeq:NP_200591.2 | PFAM:PF04576 | PO:PO:0000005 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009052 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | PFscan:PS51775 | PANTHER:PTHR31422 | PANTHER:PTHR31422:SF1 | UniParc:UPI000034F314 | SEG:seg |
Description
Protein of unknown function, DUF593 [Source:TAIR;Acc:AT5G57830]
Coordinates
chr5:-:23429291..23431198
Molecular Weight (calculated)
44009.2 Da
IEP (calculated)
4.913
GRAVY (calculated)
-0.610
Length
387 amino acids
Sequence
(BLAST)
(BLAST)
001: MVERTMSLGV GGNGETSGVR ETMWAQQELL QKINQELDAE REASSSAASE ALSMILRLQG EKAALEMEAS QYKRMAEEKM CHAETSLVLF EDLIYQKEME
101: IASLEFQVQA YRCKLLSLGC SDPAVIENKF PETLIFSGEN SRGNQKRKMK RNLSSPFDGI SSERSLLLSD VNGESFEEKK GLVESSSVSP REDLNAYWEQ
201: IRRIDEHVRE ISDSRDTQKA SKFPLIRRES ISHALVSQVS NTILESAKSD VSSIMEMMKN PERFSVKDAS LETPILSPKN VQDIFEVPRT KESLTIISEE
301: EEAEERNVRG KMVTSNYDRK VSKPPRDTSI KGEHLSLLKE IREQLNVMQS EMRSLRSELH HQSKPVSNPE EDLVLNSIQE AMIHFWL
101: IASLEFQVQA YRCKLLSLGC SDPAVIENKF PETLIFSGEN SRGNQKRKMK RNLSSPFDGI SSERSLLLSD VNGESFEEKK GLVESSSVSP REDLNAYWEQ
201: IRRIDEHVRE ISDSRDTQKA SKFPLIRRES ISHALVSQVS NTILESAKSD VSSIMEMMKN PERFSVKDAS LETPILSPKN VQDIFEVPRT KESLTIISEE
301: EEAEERNVRG KMVTSNYDRK VSKPPRDTSI KGEHLSLLKE IREQLNVMQS EMRSLRSELH HQSKPVSNPE EDLVLNSIQE AMIHFWL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.