Subcellular Localization
min:
: max
Winner_takes_all: golgi, extracellular
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 5
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra032725.1-P | Field mustard | endoplasmic reticulum, extracellular, vacuole | 68.54 | 70.65 |
| CDY01147 | Canola | extracellular, golgi, vacuole | 68.37 | 70.34 |
| CDY68842 | Canola | vacuole | 68.37 | 69.09 |
| AT4G13160.1 | Thale cress | endoplasmic reticulum | 19.51 | 39.36 |
| AT1G04890.1 | Thale cress | mitochondrion | 24.25 | 33.58 |
| GSMUA_Achr6P06580_001 | Banana | nucleus | 15.11 | 28.76 |
| VIT_05s0029g00110.t01 | Wine grape | endoplasmic reticulum, golgi | 38.66 | 27.6 |
| GSMUA_Achr3P17210_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 27.42 | 25.53 |
| TraesCS2B01G291300.1 | Wheat | plastid | 20.04 | 23.51 |
| TraesCS2A01G273300.1 | Wheat | plastid | 19.86 | 23.3 |
| TraesCS2D01G272500.1 | Wheat | plastid | 19.86 | 23.3 |
| Zm00001d014088_P001 | Maize | plastid | 19.16 | 22.02 |
| Zm00001d032786_P001 | Maize | plastid | 15.47 | 21.41 |
| OQU91677 | Sorghum | endoplasmic reticulum, golgi | 17.93 | 21.25 |
| HORVU2Hr1G066690.6 | Barley | cytosol, mitochondrion | 13.53 | 17.38 |
| AT3G54740.3 | Thale cress | cytosol, nucleus, peroxisome | 12.83 | 16.67 |
| AT2G24140.2 | Thale cress | nucleus | 8.96 | 15.74 |
| AT5G06560.1 | Thale cress | nucleus | 13.88 | 15.25 |
| AT4G30830.1 | Thale cress | nucleus | 9.31 | 14.6 |
| AT1G18990.1 | Thale cress | endoplasmic reticulum, plasma membrane | 12.83 | 13.93 |
| AT1G74830.1 | Thale cress | extracellular, golgi, vacuole | 13.18 | 13.84 |
| AT5G57830.1 | Thale cress | nucleus | 9.31 | 13.7 |
| AT3G11850.2 | Thale cress | nucleus | 12.13 | 13.69 |
| AT5G16720.1 | Thale cress | endoplasmic reticulum, golgi, vacuole | 13.88 | 11.7 |
| AT1G70750.1 | Thale cress | endoplasmic reticulum, golgi, mitochondrion | 15.29 | 11.62 |
| AT2G30690.2 | Thale cress | endoplasmic reticulum, plasma membrane, plastid | 11.78 | 8.82 |
| AT1G08800.1 | Thale cress | extracellular, vacuole | 13.01 | 6.65 |
Protein Annotations
| MapMan:35.2 | EntrezGene:826997 | ProteinID:AEE83305.1 | ProteinID:AEE83306.1 | ArrayExpress:AT4G13630 | EnsemblPlantsGene:AT4G13630 |
| RefSeq:AT4G13630 | TAIR:AT4G13630 | RefSeq:AT4G13630-TAIR-G | EnsemblPlants:AT4G13630.1 | TAIR:AT4G13630.1 | Unigene:At.33354 |
| ncoils:Coil | UniProt:F4JT43 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:GTD-bd |
| InterPro:IPR007656 | RefSeq:NP_001190719.1 | RefSeq:NP_001319921.1 | PFAM:PF04576 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000191 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007098 | PO:PO:0007115 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020100 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS51775 | PANTHER:PTHR31422 |
| PANTHER:PTHR31422:SF3 | TMHMM:TMhelix | UniParc:UPI0001505802 | SEG:seg | : | : |
Description
Protein of unknown function, DUF593 [Source:TAIR;Acc:AT4G13630]
Coordinates
chr4:-:7933684..7936516
Molecular Weight (calculated)
64028.5 Da
IEP (calculated)
5.748
GRAVY (calculated)
-0.616
Length
569 amino acids
Sequence
(BLAST)
(BLAST)
001: MRCQEVKSWT FKGLVAAFID LSVAFSLLCA SFIVYVTSKF LGLFGLDLPC PCDGLYSECF QESLRNLPVK KISSVQRSVK NRTPFDSILY NGGKKRKCER
101: RRVQLEDEVS STTPSVGKFE NKASGFDLLT AQSLKKGSFK VKSKRLSFHR SPYGFKNHYQ SCLGLKSFEG SYDENDPLLV NSNDSGKALE DVSLRKSVSL
201: SSVGCGVGEG ACSSPGMVQR TVEMSEQVLG EERAARASLA LELEKERNAA ASAADEALGM ILRLQEEKAS IEMEARQYQR MIEEKSAFDA EEMSILKEIL
301: LRREREKHFL EKEVDTYRQM FLETEQPHNT PDSKPAQIER LQTPQQITEP WDDMETVNVS SGFEIFTNQM DNTECDQSRS EPFDALSDIE LKEREEGETL
401: YAELVSRTSD IAVSKKLCED PHDIDCHVHD IHVVTDEDNK GQLNVPSDHA TQDLKLDRSQ SVSDTSYAFP QGKSNMSTNM RRNSMSAIDY ERLKIESEVG
501: LLRGRLRAVQ KGREKISFSS KDQSKSQVQR CGDKTSRFWE ARRSGHLDSS SPSSTMVKAM SMPLDLHSA
101: RRVQLEDEVS STTPSVGKFE NKASGFDLLT AQSLKKGSFK VKSKRLSFHR SPYGFKNHYQ SCLGLKSFEG SYDENDPLLV NSNDSGKALE DVSLRKSVSL
201: SSVGCGVGEG ACSSPGMVQR TVEMSEQVLG EERAARASLA LELEKERNAA ASAADEALGM ILRLQEEKAS IEMEARQYQR MIEEKSAFDA EEMSILKEIL
301: LRREREKHFL EKEVDTYRQM FLETEQPHNT PDSKPAQIER LQTPQQITEP WDDMETVNVS SGFEIFTNQM DNTECDQSRS EPFDALSDIE LKEREEGETL
401: YAELVSRTSD IAVSKKLCED PHDIDCHVHD IHVVTDEDNK GQLNVPSDHA TQDLKLDRSQ SVSDTSYAFP QGKSNMSTNM RRNSMSAIDY ERLKIESEVG
501: LLRGRLRAVQ KGREKISFSS KDQSKSQVQR CGDKTSRFWE ARRSGHLDSS SPSSTMVKAM SMPLDLHSA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.