Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX88643 | Canola | nucleus | 94.96 | 94.96 |
| CDX88641 | Canola | nucleus | 45.38 | 88.52 |
| CDY02772 | Canola | nucleus | 78.57 | 51.09 |
| CDY32744 | Canola | nucleus | 78.15 | 50.82 |
| AT5G57830.1 | Thale cress | nucleus | 82.35 | 50.65 |
| CDY51277 | Canola | nucleus | 76.89 | 49.73 |
| CDY50792 | Canola | nucleus | 76.89 | 49.73 |
| VIT_11s0037g00610.t01 | Wine grape | nucleus | 44.96 | 22.81 |
| CDY34794 | Canola | nucleus | 27.31 | 19.94 |
| CDX76832 | Canola | nucleus | 26.89 | 19.88 |
| PGSC0003DMT400028965 | Potato | nucleus | 36.97 | 19.43 |
| Solyc07g005910.2.1 | Tomato | nucleus | 36.97 | 19.43 |
| PGSC0003DMT400023950 | Potato | nucleus | 35.29 | 18.88 |
| CDY28219 | Canola | cytosol | 22.27 | 18.03 |
| CDX68698 | Canola | cytosol | 22.27 | 18.03 |
| CDX72271 | Canola | nucleus | 28.57 | 17.62 |
| KRH63109 | Soybean | nucleus | 33.61 | 17.35 |
| CDY13389 | Canola | nucleus | 28.99 | 17.16 |
| KRH72337 | Soybean | nucleus | 33.19 | 16.84 |
| KRH37764 | Soybean | nucleus | 31.51 | 16.38 |
| KRH12784 | Soybean | nucleus | 30.67 | 16.01 |
| KRH03013 | Soybean | nucleus | 31.51 | 15.82 |
| KRH55008 | Soybean | cytosol | 10.5 | 15.53 |
| Solyc11g020850.1.1 | Tomato | nucleus | 33.61 | 15.24 |
| CDY09477 | Canola | nucleus | 10.5 | 13.44 |
| TraesCS5B01G405000.1 | Wheat | nucleus | 20.59 | 13.0 |
| TraesCS5D01G410200.1 | Wheat | nucleus | 20.17 | 12.66 |
| TraesCS5A01G400200.1 | Wheat | nucleus | 20.17 | 12.66 |
| CDY14078 | Canola | nucleus | 20.17 | 12.44 |
| CDY04993 | Canola | nucleus | 20.59 | 11.95 |
| Os08t0269000-01 | Rice | cytosol, golgi, nucleus | 14.29 | 11.72 |
| Zm00001d024102_P002 | Maize | nucleus | 16.39 | 11.02 |
| GSMUA_Achr10P... | Banana | nucleus | 22.27 | 11.0 |
| TraesCS7D01G282800.1 | Wheat | nucleus | 19.75 | 10.78 |
| HORVU5Hr1G097200.5 | Barley | cytosol | 19.33 | 10.75 |
| Os08t0442350-01 | Rice | nucleus | 22.27 | 10.64 |
| TraesCS7B01G199800.1 | Wheat | nucleus | 19.33 | 10.38 |
| CDY47332 | Canola | extracellular, plasma membrane | 11.34 | 10.34 |
| CDY01114 | Canola | extracellular, plasma membrane | 11.34 | 10.34 |
| TraesCS7A01G285400.1 | Wheat | nucleus | 18.91 | 10.16 |
| CDY70407 | Canola | peroxisome | 15.55 | 10.03 |
| OQU80230 | Sorghum | cytosol | 16.81 | 10.0 |
| OQU80548 | Sorghum | nucleus | 21.43 | 9.66 |
| CDX76130 | Canola | cytosol | 15.97 | 9.55 |
| CDX67607 | Canola | peroxisome | 16.81 | 9.52 |
| CDY02887 | Canola | cytosol, nucleus, peroxisome | 15.13 | 9.5 |
| CDY01064 | Canola | nucleus | 17.65 | 9.42 |
| CDY07525 | Canola | peroxisome | 3.78 | 9.38 |
| CDX98935 | Canola | nucleus | 15.97 | 9.31 |
| CDX70091 | Canola | nucleus | 16.39 | 9.13 |
| Solyc12g009900.1.1 | Tomato | cytosol | 24.37 | 9.11 |
| CDX73453 | Canola | nucleus | 15.55 | 8.94 |
| CDX78259 | Canola | nucleus | 15.13 | 8.87 |
| PGSC0003DMT400020469 | Potato | cytosol | 25.63 | 8.79 |
| CDY08489 | Canola | nucleus | 14.29 | 8.79 |
| CDY67532 | Canola | nucleus | 15.13 | 8.63 |
| CDY07526 | Canola | nucleus | 9.66 | 7.99 |
| Zm00001d032145_P001 | Maize | nucleus | 19.75 | 7.59 |
| CDY01147 | Canola | extracellular, golgi, vacuole | 14.71 | 6.33 |
| CDX81908 | Canola | endoplasmic reticulum, vacuole | 13.03 | 6.21 |
| CDY21687 | Canola | endoplasmic reticulum, vacuole | 13.03 | 6.07 |
| CDY26705 | Canola | endoplasmic reticulum, plasma membrane, plastid | 13.03 | 5.98 |
| CDY19266 | Canola | endoplasmic reticulum, nucleus, plasma membrane | 13.03 | 5.95 |
| CDY68842 | Canola | vacuole | 13.87 | 5.86 |
| CDX89779 | Canola | endoplasmic reticulum, extracellular | 12.18 | 5.57 |
| CDY18267 | Canola | endoplasmic reticulum, plasma membrane | 11.76 | 5.37 |
| CDX85859 | Canola | extracellular, plasma membrane, vacuole | 10.5 | 5.07 |
| CDY45396 | Canola | extracellular, golgi, vacuole | 11.34 | 4.98 |
| CDX68162 | Canola | extracellular, plasma membrane, vacuole | 10.08 | 4.87 |
| CDY16985 | Canola | endoplasmic reticulum, golgi | 13.87 | 4.86 |
| CDX69426 | Canola | endoplasmic reticulum, golgi, plastid | 13.87 | 4.82 |
| CDX73116 | Canola | extracellular, golgi, vacuole | 10.92 | 4.72 |
| CDX96274 | Canola | mitochondrion | 13.87 | 4.48 |
| CDY11550 | Canola | mitochondrion | 13.87 | 4.14 |
| CDY31127 | Canola | cytosol | 10.5 | 3.85 |
| CDY10753 | Canola | endoplasmic reticulum, plasma membrane | 10.08 | 3.38 |
| CDY47125 | Canola | endoplasmic reticulum, plasma membrane | 10.08 | 3.33 |
| CDY29652 | Canola | endoplasmic reticulum | 10.08 | 3.29 |
| CDY67896 | Canola | endoplasmic reticulum, vacuole | 10.08 | 3.15 |
| CDY32134 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 11.34 | 3.09 |
| CDX95032 | Canola | endoplasmic reticulum, vacuole | 11.76 | 2.93 |
| CDX93536 | Canola | extracellular, vacuole | 11.76 | 2.9 |
| CDY31126 | Canola | endoplasmic reticulum, mitochondrion, plastid, vacuole | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY11846 | EnsemblPlantsGene:GSBRNA2T00060672001 | InterPro:GTD-bd | InterPro:IPR007656 | ncoils:Coil | PANTHER:PTHR31422 |
| PANTHER:PTHR31422:SF1 | PFAM:PF04576 | PFscan:PS51775 | ProteinID:CDY11846 | ProteinID:CDY11846.1 | UniParc:UPI0004EDD081 |
| UniProt:A0A078FEY7 | MapMan:35.2 | : | : | : | : |
Description
BnaC03g12720DBnaC03g12720D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FEY7]
Coordinates
chrLK032015:+:44600..45701
Molecular Weight (calculated)
27605.9 Da
IEP (calculated)
5.458
GRAVY (calculated)
-0.677
Length
238 amino acids
Sequence
(BLAST)
(BLAST)
001: MILRLQGEKA ALEMETSQYK RMSEEKMCHA ETSLTLFEDL IYRKEMEMAS LEFQKGVESS SLSPRQDLNA CWEEIRRIDD HVREVSESRD VAKGSKWHLL
101: RRESISHALV SQVSNTILES AKSDVSSIME MIKNPERFTA SDEVPRTKES LTIISEERNV GGKMVSSDYK RNVSKPPKDT SIEAEHMSLL KEIREQINEM
201: QSEMRSLRSE LHQTRLVSHC EEDRAINSIQ EAMIHFWL
101: RRESISHALV SQVSNTILES AKSDVSSIME MIKNPERFTA SDEVPRTKES LTIISEERNV GGKMVSSDYK RNVSKPPKDT SIEAEHMSLL KEIREQINEM
201: QSEMRSLRSE LHQTRLVSHC EEDRAINSIQ EAMIHFWL
001: MVERTMSLGV GGNGETSGVR ETMWAQQELL QKINQELDAE REASSSAASE ALSMILRLQG EKAALEMEAS QYKRMAEEKM CHAETSLVLF EDLIYQKEME
101: IASLEFQVQA YRCKLLSLGC SDPAVIENKF PETLIFSGEN SRGNQKRKMK RNLSSPFDGI SSERSLLLSD VNGESFEEKK GLVESSSVSP REDLNAYWEQ
201: IRRIDEHVRE ISDSRDTQKA SKFPLIRRES ISHALVSQVS NTILESAKSD VSSIMEMMKN PERFSVKDAS LETPILSPKN VQDIFEVPRT KESLTIISEE
301: EEAEERNVRG KMVTSNYDRK VSKPPRDTSI KGEHLSLLKE IREQLNVMQS EMRSLRSELH HQSKPVSNPE EDLVLNSIQE AMIHFWL
101: IASLEFQVQA YRCKLLSLGC SDPAVIENKF PETLIFSGEN SRGNQKRKMK RNLSSPFDGI SSERSLLLSD VNGESFEEKK GLVESSSVSP REDLNAYWEQ
201: IRRIDEHVRE ISDSRDTQKA SKFPLIRRES ISHALVSQVS NTILESAKSD VSSIMEMMKN PERFSVKDAS LETPILSPKN VQDIFEVPRT KESLTIISEE
301: EEAEERNVRG KMVTSNYDRK VSKPPRDTSI KGEHLSLLKE IREQLNVMQS EMRSLRSELH HQSKPVSNPE EDLVLNSIQE AMIHFWL
Arabidopsis Description
Protein of unknown function, DUF593 [Source:TAIR;Acc:AT5G57830]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.