Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra014792.1-P | Field mustard | cytosol | 97.24 | 97.24 |
| CDY02887 | Canola | cytosol, nucleus, peroxisome | 82.16 | 86.28 |
| CDY07525 | Canola | peroxisome | 19.6 | 81.25 |
| AT3G54740.3 | Thale cress | cytosol, nucleus, peroxisome | 79.15 | 71.92 |
| CDX67607 | Canola | peroxisome | 75.38 | 71.43 |
| CDY70407 | Canola | peroxisome | 65.33 | 70.46 |
| CDX78259 | Canola | nucleus | 71.86 | 70.44 |
| CDX73453 | Canola | nucleus | 71.11 | 68.36 |
| CDY07526 | Canola | nucleus | 47.24 | 65.28 |
| CDY14078 | Canola | nucleus | 42.46 | 43.78 |
| CDY08489 | Canola | nucleus | 41.21 | 42.38 |
| CDY04993 | Canola | nucleus | 43.22 | 41.95 |
| CDX70091 | Canola | nucleus | 43.22 | 40.28 |
| CDY01064 | Canola | nucleus | 44.72 | 39.91 |
| CDX98935 | Canola | nucleus | 40.7 | 39.71 |
| CDY67532 | Canola | nucleus | 37.44 | 35.73 |
| CDX68698 | Canola | cytosol | 15.58 | 21.09 |
| CDY28219 | Canola | cytosol | 14.57 | 19.73 |
| CDX88641 | Canola | nucleus | 6.03 | 19.67 |
| CDY32744 | Canola | nucleus | 17.59 | 19.13 |
| CDY34794 | Canola | nucleus | 15.58 | 19.02 |
| CDX76832 | Canola | nucleus | 15.33 | 18.94 |
| CDY50792 | Canola | nucleus | 17.34 | 18.75 |
| CDY02772 | Canola | nucleus | 17.09 | 18.58 |
| CDY51277 | Canola | nucleus | 17.09 | 18.48 |
| CDX72271 | Canola | nucleus | 16.83 | 17.36 |
| CDY47332 | Canola | extracellular, plasma membrane | 11.31 | 17.24 |
| CDY01114 | Canola | extracellular, plasma membrane | 11.31 | 17.24 |
| CDX88643 | Canola | nucleus | 10.05 | 16.81 |
| CDY13389 | Canola | nucleus | 16.33 | 16.17 |
| CDY09477 | Canola | nucleus | 7.54 | 16.13 |
| CDY11846 | Canola | nucleus | 9.55 | 15.97 |
| CDX89779 | Canola | endoplasmic reticulum, extracellular | 16.83 | 12.86 |
| CDY18267 | Canola | endoplasmic reticulum, plasma membrane | 16.33 | 12.48 |
| CDY01147 | Canola | extracellular, golgi, vacuole | 17.09 | 12.3 |
| CDY68842 | Canola | vacuole | 16.83 | 11.9 |
| CDX81908 | Canola | endoplasmic reticulum, vacuole | 13.82 | 11.02 |
| CDY26705 | Canola | endoplasmic reticulum, plasma membrane, plastid | 14.32 | 11.0 |
| CDY21687 | Canola | endoplasmic reticulum, vacuole | 14.07 | 10.96 |
| CDY19266 | Canola | endoplasmic reticulum, nucleus, plasma membrane | 14.32 | 10.94 |
| CDX68162 | Canola | extracellular, plasma membrane, vacuole | 13.32 | 10.75 |
| CDX85859 | Canola | extracellular, plasma membrane, vacuole | 13.07 | 10.55 |
| CDX96274 | Canola | mitochondrion | 18.84 | 10.19 |
| CDY45396 | Canola | extracellular, golgi, vacuole | 13.57 | 9.96 |
| CDY11550 | Canola | mitochondrion | 19.1 | 9.52 |
| CDX73116 | Canola | extracellular, golgi, vacuole | 13.07 | 9.44 |
| CDY16985 | Canola | endoplasmic reticulum, golgi | 15.83 | 9.28 |
| CDY31127 | Canola | cytosol | 15.08 | 9.23 |
| CDX69426 | Canola | endoplasmic reticulum, golgi, plastid | 15.83 | 9.21 |
| CDY32134 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 14.32 | 6.52 |
| CDX93536 | Canola | extracellular, vacuole | 15.33 | 6.33 |
| CDY10753 | Canola | endoplasmic reticulum, plasma membrane | 11.06 | 6.19 |
| CDY47125 | Canola | endoplasmic reticulum, plasma membrane | 11.06 | 6.1 |
| CDX95032 | Canola | endoplasmic reticulum, vacuole | 14.57 | 6.06 |
| CDY29652 | Canola | endoplasmic reticulum | 10.55 | 5.76 |
| CDY67896 | Canola | endoplasmic reticulum, vacuole | 10.8 | 5.64 |
| CDY31126 | Canola | endoplasmic reticulum, mitochondrion, plastid, vacuole | 0.25 | 0.51 |
Protein Annotations
| EnsemblPlants:CDX76130 | EnsemblPlantsGene:GSBRNA2T00126417001 | InterPro:GTD-bd | InterPro:IPR007656 | ncoils:Coil | PANTHER:PTHR31422 |
| PANTHER:PTHR31422:SF0 | PFAM:PF04576 | PFscan:PS51775 | ProteinID:CDX76130 | ProteinID:CDX76130.1 | SEG:seg |
| UniParc:UPI0004EE43E1 | MapMan:35.1 | : | : | : | : |
Description
BnaA04g03940D
Coordinates
chrLK031806:-:1220487..1221862
Molecular Weight (calculated)
45079.1 Da
IEP (calculated)
4.641
GRAVY (calculated)
-0.534
Length
398 amino acids
Sequence
(BLAST)
(BLAST)
001: MESSRDAMKG CDYSLDAYSS DPLTRTVESE NMLLLRGSSD SSLNECAALL EDHTSQRKTV QDLHLELEEE RNAAASAANE TMSMILRLQR EKAEIQMEAR
101: QFKAFAEETV THEQEKVLAL EELVYQKEQA IEALSYEVEA YKDKLMSYGV TEAEMLGFGR DSFDDYPCEY TSLRCSVEDE NLSESDGDVE VVEKVMVGQS
201: PRWSYYDPNS PLGTAKEVNG TFYTDSPMST SNARVYTIDS VHVGDSEVKI DDESSKMSKG TLDGDHWKSL TQQGVKEPDI EKLYTRLQAL EADRESLRQV
301: IVSMRTDQAQ LVLLKEIAQH LSKETVVTRR NPVSKMPFLK AFSVGTVFKW IVSFVAWRRK AKPNKYAYHL PANNMGMLMI LGEGCPTRRW NCLTSSYV
101: QFKAFAEETV THEQEKVLAL EELVYQKEQA IEALSYEVEA YKDKLMSYGV TEAEMLGFGR DSFDDYPCEY TSLRCSVEDE NLSESDGDVE VVEKVMVGQS
201: PRWSYYDPNS PLGTAKEVNG TFYTDSPMST SNARVYTIDS VHVGDSEVKI DDESSKMSKG TLDGDHWKSL TQQGVKEPDI EKLYTRLQAL EADRESLRQV
301: IVSMRTDQAQ LVLLKEIAQH LSKETVVTRR NPVSKMPFLK AFSVGTVFKW IVSFVAWRRK AKPNKYAYHL PANNMGMLMI LGEGCPTRRW NCLTSSYV
001: MDSELSFSSR DVVNCCEYGC DYSLGACSSD PLARTVKRKF NEFKEGNNMM LLRGSSDSSS SNAKILVENE CAALLEALSS QRETVKDLHL ELEEERNAAA
101: SAANETMSMI LRLQREKAEI QMEARQFKMF AQEKMTHDQE KLSVLENLLY EKEQAIEALT YEVEAYKHRL LSYGVSEAEI HDQILGFGRD SSTVGFDVYP
201: CEYTSLECSV DENPSGPDGN FEIEEKVMVG QSPRWPYYDP NSPLGTAKDI KGASFADSPM SSSSDRVYTI DSIHVGVSEV KIDDEPNKMS KGKLNGDHWN
301: SPRYQEPFTT QQGVNEPDIE KLYTRLQALE ADRESLRQII VSMRTDKAQL VLLKEIAQHL TKETGATSRR NPVSKMPSLK VFSVVTVFKW IVSFVSWKRK
401: ARQNKYVYEL SANNMGMLMI LGEGSGTRRW RCLTSSHV
101: SAANETMSMI LRLQREKAEI QMEARQFKMF AQEKMTHDQE KLSVLENLLY EKEQAIEALT YEVEAYKHRL LSYGVSEAEI HDQILGFGRD SSTVGFDVYP
201: CEYTSLECSV DENPSGPDGN FEIEEKVMVG QSPRWPYYDP NSPLGTAKDI KGASFADSPM SSSSDRVYTI DSIHVGVSEV KIDDEPNKMS KGKLNGDHWN
301: SPRYQEPFTT QQGVNEPDIE KLYTRLQALE ADRESLRQII VSMRTDKAQL VLLKEIAQHL TKETGATSRR NPVSKMPSLK VFSVVTVFKW IVSFVSWKRK
401: ARQNKYVYEL SANNMGMLMI LGEGSGTRRW RCLTSSHV
Arabidopsis Description
Uncharacterized protein T5N23_100 [Source:UniProtKB/TrEMBL;Acc:Q9M1S6]
SUBAcon: [peroxisome,nucleus,cytosol]
SUBAcon: [peroxisome,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.