Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY13389 | Canola | nucleus | 88.34 | 84.83 |
| CDY28219 | Canola | cytosol | 60.1 | 78.91 |
| CDX68698 | Canola | cytosol | 59.84 | 78.57 |
| AT4G30830.1 | Thale cress | nucleus | 69.43 | 73.83 |
| CDY34794 | Canola | nucleus | 47.15 | 55.83 |
| CDX76832 | Canola | nucleus | 45.6 | 54.66 |
| CDX88641 | Canola | nucleus | 11.14 | 35.25 |
| CDY50792 | Canola | nucleus | 27.98 | 29.35 |
| CDX88643 | Canola | nucleus | 17.88 | 28.99 |
| CDY51277 | Canola | nucleus | 27.46 | 28.8 |
| VIT_11s0037g00610.t01 | Wine grape | nucleus | 34.97 | 28.78 |
| CDY02772 | Canola | nucleus | 27.2 | 28.69 |
| CDY11846 | Canola | nucleus | 17.62 | 28.57 |
| CDY32744 | Canola | nucleus | 26.94 | 28.42 |
| KRH55008 | Soybean | cytosol | 11.4 | 27.33 |
| KRH37764 | Soybean | nucleus | 31.61 | 26.64 |
| KRH12784 | Soybean | nucleus | 30.57 | 25.88 |
| Solyc07g005910.2.1 | Tomato | nucleus | 30.05 | 25.61 |
| PGSC0003DMT400028965 | Potato | nucleus | 29.79 | 25.39 |
| KRH63109 | Soybean | nucleus | 30.05 | 25.16 |
| PGSC0003DMT400023950 | Potato | nucleus | 28.76 | 24.94 |
| KRH72337 | Soybean | nucleus | 29.53 | 24.31 |
| KRH03013 | Soybean | nucleus | 29.02 | 23.63 |
| Solyc11g020850.1.1 | Tomato | nucleus | 28.5 | 20.95 |
| Os08t0269000-01 | Rice | cytosol, golgi, nucleus | 15.29 | 20.34 |
| CDY01114 | Canola | extracellular, plasma membrane | 12.44 | 18.39 |
| CDY47332 | Canola | extracellular, plasma membrane | 12.44 | 18.39 |
| Os08t0442350-01 | Rice | nucleus | 23.58 | 18.27 |
| TraesCS5D01G410200.1 | Wheat | nucleus | 17.36 | 17.68 |
| TraesCS7A01G285400.1 | Wheat | nucleus | 20.21 | 17.61 |
| TraesCS5B01G405000.1 | Wheat | nucleus | 17.1 | 17.51 |
| TraesCS7D01G282800.1 | Wheat | nucleus | 19.69 | 17.43 |
| TraesCS5A01G400200.1 | Wheat | nucleus | 17.1 | 17.41 |
| TraesCS7B01G199800.1 | Wheat | nucleus | 19.95 | 17.38 |
| CDY14078 | Canola | nucleus | 17.36 | 17.36 |
| Zm00001d024102_P002 | Maize | nucleus | 15.8 | 17.23 |
| CDY02887 | Canola | cytosol, nucleus, peroxisome | 16.84 | 17.15 |
| CDX76130 | Canola | cytosol | 17.36 | 16.83 |
| CDX78259 | Canola | nucleus | 17.1 | 16.26 |
| CDX67607 | Canola | peroxisome | 17.62 | 16.19 |
| CDX98935 | Canola | nucleus | 17.1 | 16.18 |
| CDY09477 | Canola | nucleus | 7.77 | 16.13 |
| CDX73453 | Canola | nucleus | 17.1 | 15.94 |
| CDY04993 | Canola | nucleus | 16.84 | 15.85 |
| OQU80230 | Sorghum | cytosol | 16.32 | 15.75 |
| CDY07526 | Canola | nucleus | 11.66 | 15.62 |
| GSMUA_Achr10P... | Banana | nucleus | 19.43 | 15.56 |
| OQU80548 | Sorghum | nucleus | 21.24 | 15.53 |
| CDX70091 | Canola | nucleus | 17.1 | 15.46 |
| CDY08489 | Canola | nucleus | 15.03 | 14.99 |
| HORVU5Hr1G097200.5 | Barley | cytosol | 16.58 | 14.95 |
| CDY01064 | Canola | nucleus | 16.84 | 14.57 |
| Solyc12g009900.1.1 | Tomato | cytosol | 23.83 | 14.44 |
| CDY67532 | Canola | nucleus | 15.29 | 14.15 |
| CDY70407 | Canola | peroxisome | 13.47 | 14.09 |
| PGSC0003DMT400020469 | Potato | cytosol | 22.28 | 12.39 |
| Zm00001d032145_P001 | Maize | nucleus | 19.69 | 12.28 |
| CDX89779 | Canola | endoplasmic reticulum, extracellular | 15.03 | 11.13 |
| CDY18267 | Canola | endoplasmic reticulum, plasma membrane | 15.03 | 11.13 |
| CDY01147 | Canola | extracellular, golgi, vacuole | 15.54 | 10.85 |
| CDY68842 | Canola | vacuole | 15.03 | 10.3 |
| CDX68162 | Canola | extracellular, plasma membrane, vacuole | 12.95 | 10.14 |
| CDX85859 | Canola | extracellular, plasma membrane, vacuole | 12.44 | 9.74 |
| CDY45396 | Canola | extracellular, golgi, vacuole | 13.21 | 9.41 |
| CDY19266 | Canola | endoplasmic reticulum, nucleus, plasma membrane | 12.69 | 9.4 |
| CDY21687 | Canola | endoplasmic reticulum, vacuole | 12.44 | 9.39 |
| CDY26705 | Canola | endoplasmic reticulum, plasma membrane, plastid | 12.44 | 9.27 |
| CDX73116 | Canola | extracellular, golgi, vacuole | 12.95 | 9.07 |
| CDX81908 | Canola | endoplasmic reticulum, vacuole | 11.66 | 9.02 |
| CDX96274 | Canola | mitochondrion | 16.58 | 8.7 |
| CDY11550 | Canola | mitochondrion | 16.32 | 7.89 |
| CDY16985 | Canola | endoplasmic reticulum, golgi | 13.73 | 7.81 |
| CDX69426 | Canola | endoplasmic reticulum, golgi, plastid | 13.73 | 7.75 |
| CDY31127 | Canola | cytosol | 12.44 | 7.38 |
| CDY10753 | Canola | endoplasmic reticulum, plasma membrane | 12.44 | 6.75 |
| CDY47125 | Canola | endoplasmic reticulum, plasma membrane | 12.44 | 6.66 |
| CDY29652 | Canola | endoplasmic reticulum | 12.18 | 6.45 |
| CDY67896 | Canola | endoplasmic reticulum, vacuole | 12.18 | 6.16 |
| CDX95032 | Canola | endoplasmic reticulum, vacuole | 13.47 | 5.43 |
| CDX93536 | Canola | extracellular, vacuole | 13.47 | 5.39 |
| CDY32134 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 12.18 | 5.38 |
| CDY07525 | Canola | peroxisome | 1.3 | 5.21 |
| CDY31126 | Canola | endoplasmic reticulum, mitochondrion, plastid, vacuole | 0.78 | 1.52 |
Protein Annotations
| EnsemblPlants:CDX72271 | EnsemblPlantsGene:GSBRNA2T00099743001 | InterPro:GTD-bd | InterPro:IPR007656 | ncoils:Coil | PANTHER:PTHR31422 |
| PANTHER:PTHR31422:SF1 | PFAM:PF04576 | PFscan:PS51775 | ProteinID:CDX72271 | ProteinID:CDX72271.1 | SEG:seg |
| UniParc:UPI0004EE6BDB | MapMan:35.2 | : | : | : | : |
Description
BnaC07g42930D
Coordinates
chrLK031796:-:380001..382103
Molecular Weight (calculated)
44694.9 Da
IEP (calculated)
4.792
GRAVY (calculated)
-0.665
Length
386 amino acids
Sequence
(BLAST)
(BLAST)
001: MVRDKFKDRV CIHLNITSVQ DIKLVITLIG SASSSIKLPF FYNFSDMVER SHSFKMPGAE ITDLRMALYE RKEVVERLQD ELEAEREASA TSASEAMSMI
101: LRLQGEKAEL AMEAGQYKRI VEEEMSHAEM SFALLEDFIY QKEVEITALE YQVEAYRSQL LSLGYSDLNS LDDVKLQENH HLSLSDRSQT PSPELVDDLS
201: IPVEKEVIEQ SLDSQKSSLD VYWEQIKKLD EQVKELTHFR DSMQYKSSMS ESRVNKREED VASSSKGLCK TEETLVIKVA KQTKMDKKSP KQTRDRSGKR
301: NRGEYQAELQ RLRQRVDRLE RERTKTEPET SGVVKEEEIS LVRETKEEVS SVQSYEVKSS DRVENLQPWI DPSIVSIQEA MLYFWL
101: LRLQGEKAEL AMEAGQYKRI VEEEMSHAEM SFALLEDFIY QKEVEITALE YQVEAYRSQL LSLGYSDLNS LDDVKLQENH HLSLSDRSQT PSPELVDDLS
201: IPVEKEVIEQ SLDSQKSSLD VYWEQIKKLD EQVKELTHFR DSMQYKSSMS ESRVNKREED VASSSKGLCK TEETLVIKVA KQTKMDKKSP KQTRDRSGKR
301: NRGEYQAELQ RLRQRVDRLE RERTKTEPET SGVVKEEEIS LVRETKEEVS SVQSYEVKSS DRVENLQPWI DPSIVSIQEA MLYFWL
001: MVERSRSFRI PGAETNDLRI ALYERKEVIE RLQEELNAER EASETSANEA MSMILRLQGE KAELAMEADQ YKRMVEEQMS HAEMSFALLE DVIYQKEIEV
101: TALAYQVEVY RSQLLSLGFN DLKSLDVKLQ EDDDQDENML KMNDFSLSDR SQTPSPELVT DLSIPEEKEV IEQSLESQKS SLDVYWEQIK KLNEQVKELT
201: GFRDSMRDQH RTSVSESRGE EDFASSSNFQ EVTQERKKEA KGLSKTTDDT MMIKVSKQTK MEKKPSKQTR DRSGKRNRAE YQAELQRLRQ RVERLERGKS
301: NTEPETSGVI KQEEISLLKE VKEELSSVQS SDVKKSLNTM ENLQPWVDPT IISVQEAMLY FWL
101: TALAYQVEVY RSQLLSLGFN DLKSLDVKLQ EDDDQDENML KMNDFSLSDR SQTPSPELVT DLSIPEEKEV IEQSLESQKS SLDVYWEQIK KLNEQVKELT
201: GFRDSMRDQH RTSVSESRGE EDFASSSNFQ EVTQERKKEA KGLSKTTDDT MMIKVSKQTK MEKKPSKQTR DRSGKRNRAE YQAELQRLRQ RVERLERGKS
301: NTEPETSGVI KQEEISLLKE VKEELSSVQS SDVKKSLNTM ENLQPWVDPT IISVQEAMLY FWL
Arabidopsis Description
Putative uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:Q1PE31]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.