Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, extracellular
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 5
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 5
- golgi 4
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra032692.1-P | Field mustard | extracellular, plasma membrane | 100.0 | 100.0 |
| CDY47332 | Canola | extracellular, plasma membrane | 98.08 | 98.08 |
| AT4G13160.1 | Thale cress | endoplasmic reticulum | 71.26 | 65.96 |
| CDY01147 | Canola | extracellular, golgi, vacuole | 41.0 | 19.35 |
| CDY68842 | Canola | vacuole | 41.38 | 19.18 |
| CDX88641 | Canola | nucleus | 8.81 | 18.85 |
| PGSC0003DMT400011603 | Potato | nucleus | 36.78 | 18.82 |
| CDX89779 | Canola | endoplasmic reticulum, extracellular | 36.78 | 18.43 |
| KRH66087 | Soybean | endoplasmic reticulum, plasma membrane | 45.59 | 18.36 |
| KRH07498 | Soybean | endoplasmic reticulum, plasma membrane | 45.59 | 18.25 |
| CDY18267 | Canola | endoplasmic reticulum, plasma membrane | 35.63 | 17.85 |
| CDY09477 | Canola | nucleus | 12.64 | 17.74 |
| TraesCS2A01G273300.1 | Wheat | plastid | 32.18 | 17.32 |
| TraesCS2D01G272500.1 | Wheat | plastid | 32.18 | 17.32 |
| TraesCS2B01G291300.1 | Wheat | plastid | 31.8 | 17.11 |
| Solyc12g098380.1.1 | Tomato | extracellular, plasma membrane, vacuole | 48.66 | 17.05 |
| GSMUA_Achr6P06580_001 | Banana | nucleus | 19.16 | 16.72 |
| Zm00001d032786_P001 | Maize | plastid | 26.05 | 16.55 |
| GSMUA_Achr3P17210_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 35.63 | 15.22 |
| Zm00001d014088_P001 | Maize | plastid | 28.74 | 15.15 |
| OQU91677 | Sorghum | endoplasmic reticulum, golgi | 25.67 | 13.96 |
| CDX76832 | Canola | nucleus | 16.48 | 13.35 |
| CDY70407 | Canola | peroxisome | 18.39 | 13.01 |
| CDY14078 | Canola | nucleus | 19.16 | 12.95 |
| CDX68698 | Canola | cytosol | 14.56 | 12.93 |
| CDY08489 | Canola | nucleus | 19.16 | 12.92 |
| CDX68162 | Canola | extracellular, plasma membrane, vacuole | 24.14 | 12.78 |
| CDY28219 | Canola | cytosol | 14.18 | 12.59 |
| CDY34794 | Canola | nucleus | 15.71 | 12.58 |
| CDX85859 | Canola | extracellular, plasma membrane, vacuole | 23.75 | 12.58 |
| CDX73453 | Canola | nucleus | 19.92 | 12.56 |
| CDY07526 | Canola | nucleus | 13.79 | 12.5 |
| CDX98935 | Canola | nucleus | 19.54 | 12.5 |
| CDX72271 | Canola | nucleus | 18.39 | 12.44 |
| HORVU2Hr1G066690.6 | Barley | cytosol, mitochondrion | 21.07 | 12.42 |
| CDX78259 | Canola | nucleus | 19.16 | 12.32 |
| CDY67532 | Canola | nucleus | 19.54 | 12.23 |
| CDY02887 | Canola | cytosol, nucleus, peroxisome | 17.62 | 12.14 |
| CDX70091 | Canola | nucleus | 19.54 | 11.94 |
| CDY13389 | Canola | nucleus | 18.39 | 11.94 |
| CDY21687 | Canola | endoplasmic reticulum, vacuole | 23.37 | 11.94 |
| CDX81908 | Canola | endoplasmic reticulum, vacuole | 22.61 | 11.82 |
| CDY26705 | Canola | endoplasmic reticulum, plasma membrane, plastid | 23.37 | 11.78 |
| CDY19266 | Canola | endoplasmic reticulum, nucleus, plasma membrane | 23.37 | 11.71 |
| CDY02772 | Canola | nucleus | 16.09 | 11.48 |
| CDY04993 | Canola | nucleus | 18.01 | 11.46 |
| CDX88643 | Canola | nucleus | 10.34 | 11.34 |
| CDY11846 | Canola | nucleus | 10.34 | 11.34 |
| CDX76130 | Canola | cytosol | 17.24 | 11.31 |
| CDY01064 | Canola | nucleus | 19.16 | 11.21 |
| CDX67607 | Canola | peroxisome | 18.01 | 11.19 |
| CDY51277 | Canola | nucleus | 15.71 | 11.14 |
| CDY50792 | Canola | nucleus | 15.71 | 11.14 |
| CDY32744 | Canola | nucleus | 15.33 | 10.93 |
| CDY45396 | Canola | extracellular, golgi, vacuole | 22.22 | 10.7 |
| CDX73116 | Canola | extracellular, golgi, vacuole | 22.22 | 10.53 |
| CDX96274 | Canola | mitochondrion | 24.9 | 8.83 |
| CDY16985 | Canola | endoplasmic reticulum, golgi | 21.84 | 8.39 |
| CDX69426 | Canola | endoplasmic reticulum, golgi, plastid | 21.84 | 8.33 |
| CDY11550 | Canola | mitochondrion | 24.52 | 8.02 |
| CDY29652 | Canola | endoplasmic reticulum | 21.46 | 7.68 |
| CDY10753 | Canola | endoplasmic reticulum, plasma membrane | 20.69 | 7.59 |
| CDY47125 | Canola | endoplasmic reticulum, plasma membrane | 20.69 | 7.49 |
| CDY67896 | Canola | endoplasmic reticulum, vacuole | 21.46 | 7.34 |
| CDY31127 | Canola | cytosol | 18.01 | 7.23 |
| CDY32134 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 22.22 | 6.64 |
| CDX93536 | Canola | extracellular, vacuole | 21.07 | 5.71 |
| CDX95032 | Canola | endoplasmic reticulum, vacuole | 20.69 | 5.64 |
| CDY31126 | Canola | endoplasmic reticulum, mitochondrion, plastid, vacuole | 3.83 | 5.05 |
| CDY07525 | Canola | peroxisome | 0.38 | 1.04 |
Protein Annotations
| EnsemblPlants:CDY01114 | EnsemblPlantsGene:GSBRNA2T00111172001 | GO:A0A078EK65 | InterPro:GTD-bd | InterPro:IPR007656 | ncoils:Coil |
| PANTHER:PTHR31422 | PANTHER:PTHR31422:SF3 | PFAM:PF04576 | PFscan:PS51775 | ProteinID:CDY01114 | ProteinID:CDY01114.1 |
| SEG:seg | TMHMM:TMhelix | UniParc:UPI0002543FFA | MapMan:35.2 | : | : |
Description
BnaA04g07050D
Coordinates
chrLK031924:+:96567..97826
Molecular Weight (calculated)
30487.2 Da
IEP (calculated)
4.536
GRAVY (calculated)
-0.602
Length
261 amino acids
Sequence
(BLAST)
(BLAST)
001: MDYYRPTLCG ILVAFLELAF AYCLLCVSAF VFIASKFLPC SGSLGYQNVY KLLFDWPFEI IQRIQNMAMT SRPRVWHHQE QEEEKNSVIQ SKSLELMNKV
101: RFLEKAVEEE RLARAALMVE LEEERAASAS AADEAMAMIL RLQADKASLE MEGKQYERMI EEKFAYDEEE MNILKEILFK REREKHFLEK ELETYRQSDD
201: DRDDAGDREP IVYDVHVIED DKNSKMKHDG TAVHKERGND DQMNQMEDVL KDRESSPSPS S
101: RFLEKAVEEE RLARAALMVE LEEERAASAS AADEAMAMIL RLQADKASLE MEGKQYERMI EEKFAYDEEE MNILKEILFK REREKHFLEK ELETYRQSDD
201: DRDDAGDREP IVYDVHVIED DKNSKMKHDG TAVHKERGND DQMNQMEDVL KDRESSPSPS S
001: MDYQESYRLT FYGILVAFME LAFAYCLLCV SAFVFITSKL LLFMPCIGYQ NSDLCIQKLL FDWPFRIILR VQKLATTNRP SVLHHQEQEQ EQEQEQEEKT
101: MVDKDKNSEL MDRVRLLEVA VEQEKVAKAA LMVELEQERA ASASAADEAM AMILRLQADK ASLEMEGKQY ERMIDEKFAY DEEEMNILKE ILFKREREKH
201: FLEKELETYK HIDDDQETED NEKRECDEDG EPIVYDVHVI EDNSQTKVRD DDVAEHKEMK EEEIVKDHDS VSSPTSSSTH LP
101: MVDKDKNSEL MDRVRLLEVA VEQEKVAKAA LMVELEQERA ASASAADEAM AMILRLQADK ASLEMEGKQY ERMIDEKFAY DEEEMNILKE ILFKREREKH
201: FLEKELETYK HIDDDQETED NEKRECDEDG EPIVYDVHVI EDNSQTKVRD DDVAEHKEMK EEEIVKDHDS VSSPTSSSTH LP
Arabidopsis Description
At4g13160 [Source:UniProtKB/TrEMBL;Acc:Q9SVR1]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.