CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra038684.1-P	Field mustard	nucleus	88.01	91.07
CDY08489	Canola	nucleus	68.35	73.64
CDY01064	Canola	nucleus	75.3	70.4
AT3G11850.2	Thale cress	nucleus	67.63	55.95
CDY07525	Canola	peroxisome	12.71	55.21
CDY14078	Canola	nucleus	51.08	55.18
CDX70091	Canola	nucleus	55.64	54.33
CDX98935	Canola	nucleus	53.0	54.17
CDY04993	Canola	nucleus	52.28	53.17
VIT_08s0032g00720.t01	Wine grape	plastid	50.84	40.77
KRH68055	Soybean	cytosol	44.84	39.96
CDX76130	Canola	cytosol	35.73	37.44
CDX78259	Canola	nucleus	35.73	36.7
CDY02887	Canola	cytosol, nucleus, peroxisome	33.09	36.41
CDX73453	Canola	nucleus	35.97	36.23
CDX67607	Canola	peroxisome	36.45	36.19
CDY70407	Canola	peroxisome	31.89	36.04
KRG96316	Soybean	cytosol	41.97	30.17
CDY07526	Canola	nucleus	18.47	26.74
CDY47332	Canola	extracellular, plasma membrane	12.47	19.92
CDY28219	Canola	cytosol	13.91	19.73
CDX68698	Canola	cytosol	13.91	19.73
CDY01114	Canola	extracellular, plasma membrane	12.23	19.54
CDX88641	Canola	nucleus	5.52	18.85
CDY50792	Canola	nucleus	16.31	18.48
CDY51277	Canola	nucleus	16.31	18.48
CDY32744	Canola	nucleus	15.83	18.03
CDY02772	Canola	nucleus	15.59	17.76
CDY34794	Canola	nucleus	13.67	17.48
CDX76832	Canola	nucleus	13.43	17.39
CDY09477	Canola	nucleus	7.67	17.2
CDX88643	Canola	nucleus	9.35	16.39
CDX72271	Canola	nucleus	14.15	15.29
CDY11846	Canola	nucleus	8.63	15.13
CDY13389	Canola	nucleus	13.91	14.43
CDY01147	Canola	extracellular, golgi, vacuole	15.35	11.57
CDX89779	Canola	endoplasmic reticulum, extracellular	14.15	11.32
CDY18267	Canola	endoplasmic reticulum, plasma membrane	13.91	11.13
CDY68842	Canola	vacuole	14.87	11.01
CDY26705	Canola	endoplasmic reticulum, plasma membrane, plastid	13.67	11.0
CDX85859	Canola	extracellular, plasma membrane, vacuole	12.95	10.95
CDX68162	Canola	extracellular, plasma membrane, vacuole	12.95	10.95
CDY19266	Canola	endoplasmic reticulum, nucleus, plasma membrane	13.67	10.94
CDX73116	Canola	extracellular, golgi, vacuole	14.39	10.89
CDY45396	Canola	extracellular, golgi, vacuole	14.15	10.89
CDY21687	Canola	endoplasmic reticulum, vacuole	12.95	10.57
CDX81908	Canola	endoplasmic reticulum, vacuole	12.47	10.42
CDY16985	Canola	endoplasmic reticulum, golgi	16.55	10.16
CDX69426	Canola	endoplasmic reticulum, golgi, plastid	16.55	10.09
CDX96274	Canola	mitochondrion	17.03	9.65
CDY11550	Canola	mitochondrion	17.03	8.9
CDY31127	Canola	cytosol	12.47	8.0
CDY32134	Canola	endoplasmic reticulum, plasma membrane, vacuole	13.19	6.29
CDY10753	Canola	endoplasmic reticulum, plasma membrane	10.55	6.19
CDY47125	Canola	endoplasmic reticulum, plasma membrane	10.55	6.1
CDY29652	Canola	endoplasmic reticulum	10.55	6.04
CDY67896	Canola	endoplasmic reticulum, vacuole	10.55	5.77
CDX95032	Canola	endoplasmic reticulum, vacuole	13.19	5.75
CDX93536	Canola	extracellular, vacuole	13.19	5.71
CDY31126	Canola	endoplasmic reticulum, mitochondrion, plastid, vacuole	0.72	1.52

Protein Annotations

EnsemblPlants:CDY67532	EnsemblPlantsGene:GSBRNA2T00064375001	InterPro:GTD-bd	InterPro:IPR007656	ncoils:Coil	PANTHER:PTHR31422
PANTHER:PTHR31422:SF0	PFAM:PF04576	PFscan:PS51775	ProteinID:CDY67532	ProteinID:CDY67532.1	SEG:seg
UniParc:UPI0004EE86A3	UniProt:A0A078JQ58	MapMan:35.1	:	:	:

Description

BnaC01g44940DBnaC01g44940D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JQ58]

Coordinates

chrLK036214:-:4975..7062

Molecular Weight (calculated)

47689.7 Da

IEP (calculated)

4.677

GRAVY (calculated)

-0.795

Length

417 amino acids

Sequence
(BLAST)

001: MESRDLIQCC DCGCHHSSPR SNNNQFSNNP KVHIENECEL LRQTVTSQQQ SIQDLYDELE KERNAASSAA DESMNVMQRL QHDKAELQME LRQYKVYAGE
101: KMEHDLQEIL ALEEVVSQRE QTILALECEA QGYKHRMMSY GITEGEANGD MSLVDAYDYD YEYEYPSLKC NINENQDSLG ADVYVADDEN YPPADSPRGR
201: VHLRSLDQRI SQIETNPSLD GGFRVASEKD DVFVESENYK HVSYSENDDN AKGGGESLDI GDEMSDRVYT IDSGHQGGVT EQKVEVGNVE QVEHGDPDIT
301: KLYMRLQALE ADRESMKEAL LSMRTEKAQM VLLKELAQHL SKEVVPQRRL PLRKTSADGT LAFTPVFKWI TSFVSWRRKA RQSKYMYGMS TNSMGLQMVL
401: EKVPRSRNWR CLRSTQV

Best Arabidopsis Sequence Match ( AT3G11850.2 )
(BLAST)

001: MESPIKCCDC GCDCCSSSPG SWIRSVKKRR HDELQTEKRF SIPELDDLDM FSNPRVQIEN ECELLRETVS NQQQTIQDLY HELEQERIAS STAADETVKM
101: IQTLEREKAK IDLELKQLQR SVDETLNYEN QEIEALENMV YQRDQTIQAL TFETQAYKHR MMSFGLTEAE ADGERSLLSR NPSMIDFSSE YDCPTQDYPP
201: LKCNINENQD PLEADIYVAD DENYPPADSP HGRVHLKTLD RRLSQMETNP SFTQLNRGRD VSEKGMVGES PRRQRHFRRI SPTGSSSSHL GASKELRPDV
301: FVDSPRSQSY SSKKMEDVSY TENNNAKDDL SEIGDDMSDR VYTIDSVHHS SVAHSGGVAE QKIEDGASDG NVVFPREHTD LGDPDITKLY MRLQALEADR
401: ESMKHALLSM RTEKAQMVLL KEIAQHLSKE VVPQRRLPLR KASIAGPLTF TPVFKWITSF VSWKRKARRS KYMYGMSGNN IGLQMLLEKV PRSRKWRCLR
501: STQV

Arabidopsis Description

F26K24.14 protein [Source:UniProtKB/TrEMBL;Acc:Q9SF14]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.