Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- plasma membrane 3
- extracellular 2
- endoplasmic reticulum 3
- vacuole 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX89779 | Canola | endoplasmic reticulum, extracellular | 93.67 | 93.67 |
| Bra015360.1-P | Field mustard | endoplasmic reticulum, extracellular | 93.47 | 93.3 |
| AT1G04890.1 | Thale cress | mitochondrion | 59.31 | 75.18 |
| CDY47332 | Canola | extracellular, plasma membrane | 17.85 | 35.63 |
| CDY01114 | Canola | extracellular, plasma membrane | 17.85 | 35.63 |
| CDY01147 | Canola | extracellular, golgi, vacuole | 33.4 | 31.46 |
| CDY68842 | Canola | vacuole | 33.01 | 30.55 |
| GSMUA_Achr6P06580_001 | Banana | nucleus | 15.55 | 27.09 |
| Solyc12g098380.1.1 | Tomato | extracellular, plasma membrane, vacuole | 35.7 | 24.97 |
| PGSC0003DMT400011603 | Potato | nucleus | 24.38 | 24.9 |
| GSMUA_Achr3P17210_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 27.64 | 23.57 |
| CDX88641 | Canola | nucleus | 4.61 | 19.67 |
| CDY09477 | Canola | nucleus | 6.91 | 19.35 |
| Zm00001d032786_P001 | Maize | plastid | 15.16 | 19.22 |
| Zm00001d014088_P001 | Maize | plastid | 18.04 | 18.99 |
| TraesCS2A01G273300.1 | Wheat | plastid | 17.47 | 18.76 |
| TraesCS2D01G272500.1 | Wheat | plastid | 17.47 | 18.76 |
| TraesCS2B01G291300.1 | Wheat | plastid | 17.47 | 18.76 |
| OQU91677 | Sorghum | endoplasmic reticulum, golgi | 17.27 | 18.75 |
| CDY14078 | Canola | nucleus | 13.82 | 18.65 |
| CDY07526 | Canola | nucleus | 9.79 | 17.71 |
| CDY08489 | Canola | nucleus | 12.86 | 17.31 |
| CDX78259 | Canola | nucleus | 13.44 | 17.24 |
| CDX73453 | Canola | nucleus | 13.63 | 17.15 |
| CDX67607 | Canola | peroxisome | 13.63 | 16.9 |
| CDX70091 | Canola | nucleus | 13.63 | 16.63 |
| CDY04993 | Canola | nucleus | 13.05 | 16.59 |
| CDY02887 | Canola | cytosol, nucleus, peroxisome | 11.9 | 16.36 |
| CDX76130 | Canola | cytosol | 12.48 | 16.33 |
| CDX98935 | Canola | nucleus | 12.67 | 16.18 |
| CDY70407 | Canola | peroxisome | 11.32 | 15.99 |
| CDX68698 | Canola | cytosol | 9.02 | 15.99 |
| CDY28219 | Canola | cytosol | 9.02 | 15.99 |
| CDX76832 | Canola | nucleus | 9.79 | 15.84 |
| CDY34794 | Canola | nucleus | 9.79 | 15.64 |
| CDY01064 | Canola | nucleus | 13.05 | 15.25 |
| CDX72271 | Canola | nucleus | 11.13 | 15.03 |
| CDY13389 | Canola | nucleus | 11.52 | 14.93 |
| CDX68162 | Canola | extracellular, plasma membrane, vacuole | 13.63 | 14.4 |
| CDY21687 | Canola | endoplasmic reticulum, vacuole | 14.01 | 14.29 |
| CDX85859 | Canola | extracellular, plasma membrane, vacuole | 13.44 | 14.2 |
| CDY26705 | Canola | endoplasmic reticulum, plasma membrane, plastid | 14.01 | 14.09 |
| CDX81908 | Canola | endoplasmic reticulum, vacuole | 13.44 | 14.03 |
| CDY67532 | Canola | nucleus | 11.13 | 13.91 |
| CDY19266 | Canola | endoplasmic reticulum, nucleus, plasma membrane | 13.82 | 13.82 |
| HORVU2Hr1G066690.6 | Barley | cytosol, mitochondrion | 11.52 | 13.54 |
| CDY45396 | Canola | extracellular, golgi, vacuole | 13.82 | 13.28 |
| CDY02772 | Canola | nucleus | 9.21 | 13.11 |
| CDX73116 | Canola | extracellular, golgi, vacuole | 13.82 | 13.07 |
| CDY51277 | Canola | nucleus | 9.21 | 13.04 |
| CDY50792 | Canola | nucleus | 9.02 | 12.77 |
| CDY32744 | Canola | nucleus | 8.83 | 12.57 |
| CDX88643 | Canola | nucleus | 5.57 | 12.18 |
| CDY11846 | Canola | nucleus | 5.37 | 11.76 |
| CDX96274 | Canola | mitochondrion | 16.12 | 11.41 |
| CDY31126 | Canola | endoplasmic reticulum, mitochondrion, plastid, vacuole | 4.03 | 10.61 |
| CDY11550 | Canola | mitochondrion | 16.12 | 10.53 |
| CDY16985 | Canola | endoplasmic reticulum, golgi | 13.24 | 10.16 |
| CDX69426 | Canola | endoplasmic reticulum, golgi, plastid | 13.24 | 10.09 |
| CDY29652 | Canola | endoplasmic reticulum | 13.63 | 9.74 |
| CDY10753 | Canola | endoplasmic reticulum, plasma membrane | 13.24 | 9.7 |
| CDY47125 | Canola | endoplasmic reticulum, plasma membrane | 13.24 | 9.57 |
| CDY67896 | Canola | endoplasmic reticulum, vacuole | 13.44 | 9.17 |
| CDY32134 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 14.01 | 8.35 |
| CDY31127 | Canola | cytosol | 9.79 | 7.85 |
| CDX93536 | Canola | extracellular, vacuole | 13.82 | 7.47 |
| CDX95032 | Canola | endoplasmic reticulum, vacuole | 13.63 | 7.42 |
| CDY07525 | Canola | peroxisome | 0.58 | 3.12 |
Protein Annotations
| EnsemblPlants:CDY18267 | EnsemblPlantsGene:GSBRNA2T00002802001 | GO:A0A078FZT2 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:GTD-bd | InterPro:IPR007656 | ncoils:Coil | PANTHER:PTHR31422 | PANTHER:PTHR31422:SF3 | PFAM:PF04576 |
| PFscan:PS51775 | ProteinID:CDY18267 | ProteinID:CDY18267.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EDE4FE |
| UniProt:A0A078FZT2 | MapMan:35.2 | : | : | : | : |
Description
BnaC05g02900DBnaC05g02900D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FZT2]
Coordinates
chrLK032083:-:598165..600028
Molecular Weight (calculated)
59599.9 Da
IEP (calculated)
6.844
GRAVY (calculated)
-0.688
Length
521 amino acids
Sequence
(BLAST)
(BLAST)
001: MPCLDTQDWS LTDLIGAFLN LTIAYLLLCT SLFIHVVLRS IGLLGFSLPR FHNGRFGDPN MCIEGNLVAC ASEKISSVDR LIKSKIPFGS ITSDDDDSKR
101: FVEMKLVRKN SGDVSNARVK DETEEDASRD EQGVKGKRFV TRRPRKGLKN PRRCRVDYGS LGSVSSLEAF DETVKHPLMQ PYDHAFIRAK EERCSNDDDC
201: KDDVKKEERI SPSHWPELEK TVSLNSSASL CFVRNVEEKS INELEEALKK ERAARAAVCV ELDKERSAAA SAADEAMAMI HRLQDEKAAI EMEAMQFQRM
301: VEEKSTFDAE EMVILKDILI RREREKHFLE KEVEAYRDLL VEAEESECSL PKENQKQEPP QERRALLVQE HDGTVLDMHY REDKNRYLYT SDSEVAYSRV
401: RDVYMVKEEK ENVEKKKTLE ESSASNGIIV SGIARKLPPL CRPRKQSLSS SGSRRKSMSA VDYERLKIEN EVELLRERLK AVQEERKELT RRASLPPLSS
501: KVRVTSKNRG LRRSSMDLHS S
101: FVEMKLVRKN SGDVSNARVK DETEEDASRD EQGVKGKRFV TRRPRKGLKN PRRCRVDYGS LGSVSSLEAF DETVKHPLMQ PYDHAFIRAK EERCSNDDDC
201: KDDVKKEERI SPSHWPELEK TVSLNSSASL CFVRNVEEKS INELEEALKK ERAARAAVCV ELDKERSAAA SAADEAMAMI HRLQDEKAAI EMEAMQFQRM
301: VEEKSTFDAE EMVILKDILI RREREKHFLE KEVEAYRDLL VEAEESECSL PKENQKQEPP QERRALLVQE HDGTVLDMHY REDKNRYLYT SDSEVAYSRV
401: RDVYMVKEEK ENVEKKKTLE ESSASNGIIV SGIARKLPPL CRPRKQSLSS SGSRRKSMSA VDYERLKIEN EVELLRERLK AVQEERKELT RRASLPPLSS
501: KVRVTSKNRG LRRSSMDLHS S
001: MTVQGMKGKR FVTRRSRNGL KNHRRSGRVN CASLRSISSS EAFDETAKTN LMQPYDETCS NDDQKDCGKA GEGTNLSHWP EFEKTVSVNQ QVNSNSSAEQ
101: SFVRNVEKRS VRDLEELLKE ERAARATVCV ELDKERSAAA SAADEAMAMI HRLQDEKAAI EMEARQFQRL VEERSTFDAE EMVILKDILI RREREKHFLE
201: KEVEAYRQLL EETEELECSL IKEKNVPEPE HKQNKDCQER RALLVQELDG TVLDMPYREE GNRDKNRDLY KSDSEVAYSR VRDVYMVKDE TENISKKKNL
301: EESSVGKPKE SLDENSIIVS GIARKLPPLC RPRKKSLSSS GSRRKSMSAV DYERLKIENE VELLRERLKA VQEEREELTR RASLPPLPSK VRATSEKRSW
401: TRSCSMDLHS S
101: SFVRNVEKRS VRDLEELLKE ERAARATVCV ELDKERSAAA SAADEAMAMI HRLQDEKAAI EMEARQFQRL VEERSTFDAE EMVILKDILI RREREKHFLE
201: KEVEAYRQLL EETEELECSL IKEKNVPEPE HKQNKDCQER RALLVQELDG TVLDMPYREE GNRDKNRDLY KSDSEVAYSR VRDVYMVKDE TENISKKKNL
301: EESSVGKPKE SLDENSIIVS GIARKLPPLC RPRKKSLSSS GSRRKSMSAV DYERLKIENE VELLRERLKA VQEEREELTR RASLPPLPSK VRATSEKRSW
401: TRSCSMDLHS S
Arabidopsis Description
Protein of unknown function, DUF593 [Source:TAIR;Acc:AT1G04890]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.