Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra007093.1-P | Field mustard | nucleus | 99.26 | 99.26 |
| CDX73453 | Canola | nucleus | 97.04 | 95.17 |
| CDY07525 | Canola | peroxisome | 19.95 | 84.38 |
| AT3G54740.3 | Thale cress | cytosol, nucleus, peroxisome | 81.03 | 75.11 |
| CDX67607 | Canola | peroxisome | 74.88 | 72.38 |
| CDY70407 | Canola | peroxisome | 65.52 | 72.09 |
| CDX76130 | Canola | cytosol | 70.44 | 71.86 |
| CDY02887 | Canola | cytosol, nucleus, peroxisome | 65.76 | 70.45 |
| CDY07526 | Canola | nucleus | 48.28 | 68.06 |
| CDY14078 | Canola | nucleus | 41.38 | 43.52 |
| CDY08489 | Canola | nucleus | 40.89 | 42.89 |
| CDY04993 | Canola | nucleus | 41.63 | 41.22 |
| CDX98935 | Canola | nucleus | 39.66 | 39.46 |
| CDX70091 | Canola | nucleus | 41.13 | 39.11 |
| CDY01064 | Canola | nucleus | 41.87 | 38.12 |
| CDY67532 | Canola | nucleus | 36.7 | 35.73 |
| CDX88641 | Canola | nucleus | 6.4 | 21.31 |
| CDX68698 | Canola | cytosol | 14.78 | 20.41 |
| CDY47332 | Canola | extracellular, plasma membrane | 12.32 | 19.16 |
| CDY01114 | Canola | extracellular, plasma membrane | 12.32 | 19.16 |
| CDY28219 | Canola | cytosol | 13.79 | 19.05 |
| CDY34794 | Canola | nucleus | 15.27 | 19.02 |
| CDX76832 | Canola | nucleus | 15.02 | 18.94 |
| CDY09477 | Canola | nucleus | 8.37 | 18.28 |
| CDY50792 | Canola | nucleus | 16.26 | 17.93 |
| CDY02772 | Canola | nucleus | 15.76 | 17.49 |
| CDY32744 | Canola | nucleus | 15.76 | 17.49 |
| CDY51277 | Canola | nucleus | 15.76 | 17.39 |
| CDX72271 | Canola | nucleus | 16.26 | 17.1 |
| CDX88643 | Canola | nucleus | 9.36 | 15.97 |
| CDY13389 | Canola | nucleus | 15.27 | 15.42 |
| CDY11846 | Canola | nucleus | 8.87 | 15.13 |
| CDX89779 | Canola | endoplasmic reticulum, extracellular | 17.73 | 13.82 |
| CDY18267 | Canola | endoplasmic reticulum, plasma membrane | 17.24 | 13.44 |
| CDY01147 | Canola | extracellular, golgi, vacuole | 17.73 | 13.02 |
| CDY68842 | Canola | vacuole | 17.49 | 12.61 |
| CDX68162 | Canola | extracellular, plasma membrane, vacuole | 15.02 | 12.37 |
| CDX81908 | Canola | endoplasmic reticulum, vacuole | 15.02 | 12.22 |
| CDX85859 | Canola | extracellular, plasma membrane, vacuole | 14.78 | 12.17 |
| CDY26705 | Canola | endoplasmic reticulum, plasma membrane, plastid | 15.52 | 12.16 |
| CDY21687 | Canola | endoplasmic reticulum, vacuole | 15.27 | 12.13 |
| CDY19266 | Canola | endoplasmic reticulum, nucleus, plasma membrane | 15.52 | 12.09 |
| CDY45396 | Canola | extracellular, golgi, vacuole | 15.27 | 11.44 |
| CDX73116 | Canola | extracellular, golgi, vacuole | 14.78 | 10.89 |
| CDX96274 | Canola | mitochondrion | 19.21 | 10.6 |
| CDY11550 | Canola | mitochondrion | 18.97 | 9.65 |
| CDX69426 | Canola | endoplasmic reticulum, golgi, plastid | 16.26 | 9.65 |
| CDY16985 | Canola | endoplasmic reticulum, golgi | 16.01 | 9.57 |
| CDY31127 | Canola | cytosol | 14.78 | 9.23 |
| CDY10753 | Canola | endoplasmic reticulum, plasma membrane | 12.81 | 7.31 |
| CDY47125 | Canola | endoplasmic reticulum, plasma membrane | 12.81 | 7.21 |
| CDY29652 | Canola | endoplasmic reticulum | 12.32 | 6.86 |
| CDY32134 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 14.29 | 6.64 |
| CDX95032 | Canola | endoplasmic reticulum, vacuole | 15.27 | 6.48 |
| CDX93536 | Canola | extracellular, vacuole | 15.27 | 6.43 |
| CDY67896 | Canola | endoplasmic reticulum, vacuole | 12.07 | 6.42 |
| CDY31126 | Canola | endoplasmic reticulum, mitochondrion, plastid, vacuole | 0.49 | 1.01 |
Protein Annotations
| EnsemblPlants:CDX78259 | EnsemblPlantsGene:GSBRNA2T00129594001 | InterPro:GTD-bd | InterPro:IPR007656 | ncoils:Coil | PANTHER:PTHR31422 |
| PANTHER:PTHR31422:SF0 | PFAM:PF04576 | PFscan:PS51775 | ProteinID:CDX78259 | ProteinID:CDX78259.1 | SEG:seg |
| UniParc:UPI0004EE4EA9 | MapMan:35.1 | : | : | : | : |
Description
BnaA09g34540D
Coordinates
chrLK031814:+:2032653..2034029
Molecular Weight (calculated)
46245.0 Da
IEP (calculated)
5.615
GRAVY (calculated)
-0.585
Length
406 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSELKFSSR DVVKRCDYSL EASSSSSEPL TRTVKRKLND FLLRGSSSDS SSNAKSLVEN ECAALLEDLS TQRKTVKDLH LELEEERKAA ASAANETMSM
101: ILRLQREKAE IQMEARQFKA FAEEKMTHDQ EKLLVLEELL YEKEQAIEAL TYEVEAYKDK LLSYGLTEGE IHDEILGFGK DSVDVYPCEY SVDDQSPRWP
201: YYDPNSPLGT AKEIKGTEFC ADSPMSSSGD RVYTIDSIHV GVSEVKIVDE PSRLSKGKLN GDHWDSPRKE EPVMMMMAQQ GGNEPGIEKL YTRLQALEAD
301: RESLRQIIVS MRTDKAQLVL LKEYAQRLSK ETVTTDRRNM VSKMPFFKGV SVVTAFKWMV SFVSWRRKAK RNKYVYDMSA NNMGMLMILG EGSRSRRWSC
401: LTSSHV
101: ILRLQREKAE IQMEARQFKA FAEEKMTHDQ EKLLVLEELL YEKEQAIEAL TYEVEAYKDK LLSYGLTEGE IHDEILGFGK DSVDVYPCEY SVDDQSPRWP
201: YYDPNSPLGT AKEIKGTEFC ADSPMSSSGD RVYTIDSIHV GVSEVKIVDE PSRLSKGKLN GDHWDSPRKE EPVMMMMAQQ GGNEPGIEKL YTRLQALEAD
301: RESLRQIIVS MRTDKAQLVL LKEYAQRLSK ETVTTDRRNM VSKMPFFKGV SVVTAFKWMV SFVSWRRKAK RNKYVYDMSA NNMGMLMILG EGSRSRRWSC
401: LTSSHV
001: MDSELSFSSR DVVNCCEYGC DYSLGACSSD PLARTVKRKF NEFKEGNNMM LLRGSSDSSS SNAKILVENE CAALLEALSS QRETVKDLHL ELEEERNAAA
101: SAANETMSMI LRLQREKAEI QMEARQFKMF AQEKMTHDQE KLSVLENLLY EKEQAIEALT YEVEAYKHRL LSYGVSEAEI HDQILGFGRD SSTVGFDVYP
201: CEYTSLECSV DENPSGPDGN FEIEEKVMVG QSPRWPYYDP NSPLGTAKDI KGASFADSPM SSSSDRVYTI DSIHVGVSEV KIDDEPNKMS KGKLNGDHWN
301: SPRYQEPFTT QQGVNEPDIE KLYTRLQALE ADRESLRQII VSMRTDKAQL VLLKEIAQHL TKETGATSRR NPVSKMPSLK VFSVVTVFKW IVSFVSWKRK
401: ARQNKYVYEL SANNMGMLMI LGEGSGTRRW RCLTSSHV
101: SAANETMSMI LRLQREKAEI QMEARQFKMF AQEKMTHDQE KLSVLENLLY EKEQAIEALT YEVEAYKHRL LSYGVSEAEI HDQILGFGRD SSTVGFDVYP
201: CEYTSLECSV DENPSGPDGN FEIEEKVMVG QSPRWPYYDP NSPLGTAKDI KGASFADSPM SSSSDRVYTI DSIHVGVSEV KIDDEPNKMS KGKLNGDHWN
301: SPRYQEPFTT QQGVNEPDIE KLYTRLQALE ADRESLRQII VSMRTDKAQL VLLKEIAQHL TKETGATSRR NPVSKMPSLK VFSVVTVFKW IVSFVSWKRK
401: ARQNKYVYEL SANNMGMLMI LGEGSGTRRW RCLTSSHV
Arabidopsis Description
Uncharacterized protein T5N23_100 [Source:UniProtKB/TrEMBL;Acc:Q9M1S6]
SUBAcon: [peroxisome,nucleus,cytosol]
SUBAcon: [peroxisome,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.