Factsheet for PGSC0003DMT400011603

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
peroxisome 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	peroxisome
PTS1:	peroxisome
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g098380.1.1	Tomato	extracellular, plasma membrane, vacuole	92.35	63.22
Bra034886.1-P	Field mustard	cytosol	12.35	49.22
CDY47332	Canola	extracellular, plasma membrane	18.82	36.78
Bra032692.1-P	Field mustard	extracellular, plasma membrane	18.82	36.78
CDY01114	Canola	extracellular, plasma membrane	18.82	36.78
GSMUA_Achr6P06580_001	Banana	nucleus	20.98	35.79
AT1G04890.1	Thale cress	mitochondrion	25.69	31.87
AT4G13160.1	Thale cress	endoplasmic reticulum	17.06	30.85
GSMUA_Achr3P17210_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	29.61	24.71
CDY18267	Canola	endoplasmic reticulum, plasma membrane	24.9	24.38
Bra015360.1-P	Field mustard	endoplasmic reticulum, extracellular	24.9	24.33
CDX89779	Canola	endoplasmic reticulum, extracellular	24.71	24.18
KRH07498	Soybean	endoplasmic reticulum, plasma membrane	29.02	22.7
KRH66087	Soybean	endoplasmic reticulum, plasma membrane	26.08	20.52
TraesCS2D01G272500.1	Wheat	plastid	18.43	19.38
Zm00001d014088_P001	Maize	plastid	18.43	18.99
TraesCS2B01G291300.1	Wheat	plastid	17.84	18.76
TraesCS2A01G273300.1	Wheat	plastid	17.84	18.76
HORVU2Hr1G066690.6	Barley	cytosol, mitochondrion	15.88	18.28
PGSC0003DMT400022326	Potato	nucleus	17.25	17.74
OQU91677	Sorghum	endoplasmic reticulum, golgi	16.67	17.71
PGSC0003DMT400028965	Potato	nucleus	14.71	16.56
PGSC0003DMT400072288	Potato	plastid	16.67	16.47
Zm00001d032786_P001	Maize	plastid	13.14	16.3
PGSC0003DMT400023950	Potato	nucleus	13.92	15.96
PGSC0003DMT400030876	Potato	endoplasmic reticulum, extracellular	12.16	11.97
PGSC0003DMT400020469	Potato	cytosol	15.69	11.53
PGSC0003DMT400062848	Potato	golgi	13.33	11.35
PGSC0003DMT400083120	Potato	endoplasmic reticulum	12.16	10.37
PGSC0003DMT400075922	Potato	endoplasmic reticulum, golgi	16.67	9.91
PGSC0003DMT400070777	Potato	golgi, plasma membrane, plastid	13.53	8.01
PGSC0003DMT400080686	Potato	endoplasmic reticulum, golgi, plastid	15.1	6.69

Protein Annotations

EnsemblPlants:PGSC0003DMT400011603	EnsemblPlantsGene:PGSC0003DMG401004568	InterPro:GTD-bd	InterPro:IPR007656	ncoils:Coil	PANTHER:PTHR31422
PANTHER:PTHR31422:SF3	PFAM:PF04576	PFscan:PS51775	PGSC:PGSC0003DMG401004568	SEG:seg	UniParc:UPI00029609E4
UniProt:M0ZZT7	MapMan:35.2	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG401004568]

Coordinates

chr12:+:59178207..59179850

Molecular Weight (calculated)

57601.9 Da

IEP (calculated)

4.705

GRAVY (calculated)

-0.675

Length

510 amino acids

Sequence
(BLAST)

001: MRLGQRDSFE LNGSSDEVEH TEKNIASIEE LRHNGEPVSS FHEENRIRFL EQALEHEREA RDALCIELEK ERNAAASAAD EAMAMILRLQ EEKASIEMDA
101: RQYQRLIEEK SAFEAEEMNI LMEIVMRTER EKHFLEKELE VYRQMTYLGN EESTVDSGNV VDALRRPVAS SDLNEDPLLM LHQISAFFNK RTVVENRNSE
201: EVISLDKQNY IALGGEALIQ RQNKDVNSQK QVDLAEHSCS QEFQEKEMVF MVNHSDVGPG NGKILDTSLK PCETGLSEQK LPDQAISLEG EVLKENPDME
301: TSDRACIDVS RKDKCLKYHE TVGYQGSKCP CNMTSDKEPR VHDVHVIVDG SNFCNDVSSG ESRKSALEFS GKTSLPIEAS PTQDVIRDRP STSTLYTQVD
401: LKISADTTGG LPPVGSCGKP LLCDSRGNSI SSVDNERLKI EMEVERLRGR LKIVQEGREK LDLTAEHRER GKMQLKLLED IAHQLQEIRQ LAEPEKAVRQ
501: ASLPLPFSKV

Best Arabidopsis Sequence Match ( AT4G13630.2 )
(BLAST)

001: MRCQEVKSWT FKGLVAAFID LSVAFSLLCA SFIVYVTSKF LGLFGLDLPC PCDGLYSECF QESLRNLPVK KISSVQRSVK NRTPFDSILY NGGKKRKCER
101: RRVQLEDEVS STTPSVGKFE NKASGFDLLT AQSLKKGSFK VKSKRLSFHR SPYGFKNHYQ SCLGLKSFEG SYDENDPLLV NSNDSGKALE DVSLRKSVSL
201: SSVGCGVGEG ACSSPGMVQR TVEMSEQVLG EERAARASLA LELEKERNAA ASAADEALGM ILRLQEEKAS IEMEARQYQR MIEEKSAFDA EEMSILKEIL
301: LRREREKHFL EKEVDTYRQM FLETEQPHNT PDSKPAQIER LQTPQQITEP WDDMETVNVS SGFEIFTNQM DNTECDQSRS EPFDALSDIE LKEREEGETL
401: YAELVSRTSD IAVSKKLCED PHDIDCHVHD IHVVTDEDNK GQLNVPSDHA TQDLKLDRSQ SVSDTSYAFP QGKSNMSTNM RRNSMSAIDY ERLKIESEVG
501: LLRGRLRAVQ KGREKISFSS KDQSKSQVQR CGDKTSRFWE ARRSGHLDSS SPSSTMVKAM SMPLDLHSA

Arabidopsis Description

Protein of unknown function, DUF593 [Source:TAIR;Acc:AT4G13630]
SUBAcon: [golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.