Factsheet for PGSC0003DMT400072288

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g081620.1.1	Tomato	cytosol, plastid	98.45	98.45
PGSC0003DMT400022326	Potato	nucleus	70.35	73.19
KRH71751	Soybean	nucleus	56.98	60.0
KRH32933	Soybean	nucleus	55.43	58.37
GSMUA_Achr8P26680_001	Banana	cytosol	29.07	49.51
GSMUA_Achr1P14210_001	Banana	cytosol	33.53	48.46
GSMUA_Achr8P04680_001	Banana	cytosol, mitochondrion	32.75	45.07
GSMUA_Achr3P15020_001	Banana	nucleus	38.76	44.35
GSMUA_Achr2P12800_001	Banana	cytosol, nucleus, plasma membrane	38.18	43.78
GSMUA_Achr4P22730_001	Banana	nucleus, plastid	37.79	40.88
Zm00001d023648_P003	Maize	plastid	31.59	34.39
Zm00001d033504_P001	Maize	nucleus	32.75	34.0
TraesCS1B01G165300.1	Wheat	plastid	31.01	33.4
TraesCS1A01G147200.1	Wheat	plastid	30.81	33.19
TraesCS4A01G159000.1	Wheat	cytosol	28.1	33.03
TraesCS1D01G145300.1	Wheat	cytosol	24.22	32.89
OQU79118	Sorghum	plastid	15.31	32.51
Os03t0650800-00	Rice	nucleus	31.4	32.4
OQU91257	Sorghum	nucleus	31.98	32.29
TraesCS5B01G373100.1	Wheat	nucleus	31.2	32.2
Os12t0488700-00	Rice	cytosol	31.2	31.76
Zm00001d013658_P001	Maize	nucleus	30.62	31.66
KXG28744	Sorghum	cytosol	27.52	31.35
TraesCS5D01G380300.1	Wheat	cytosol	24.03	31.16
Zm00001d007503_P001	Maize	nucleus	27.33	30.92
TraesCS5A01G370700.1	Wheat	nucleus	19.19	29.73
HORVU4Hr1G041430.2	Barley	cytosol	23.84	29.08
HORVU0Hr1G000300.2	Barley	cytosol	23.64	27.79
HORVU5Hr1G092270.4	Barley	cytosol, plastid	19.77	24.64
PGSC0003DMT400023950	Potato	nucleus	18.8	21.8
PGSC0003DMT400028965	Potato	nucleus	18.99	21.63
PGSC0003DMT400011603	Potato	nucleus	16.47	16.67
PGSC0003DMT400020469	Potato	cytosol	19.96	14.84
PGSC0003DMT400030876	Potato	endoplasmic reticulum, extracellular	14.15	14.09
PGSC0003DMT400062848	Potato	golgi	15.7	13.52
PGSC0003DMT400083120	Potato	endoplasmic reticulum	14.15	12.21
PGSC0003DMT400075922	Potato	endoplasmic reticulum, golgi	17.25	10.37
PGSC0003DMT400070777	Potato	golgi, plasma membrane, plastid	15.89	9.52
PGSC0003DMT400080686	Potato	endoplasmic reticulum, golgi, plastid	17.05	7.65

Protein Annotations

EnsemblPlants:PGSC0003DMT400072288	EnsemblPlantsGene:PGSC0003DMG400028131	EntrezGene:102592619	InterPro:GTD-bd	InterPro:IPR007656	ncoils:Coil
PANTHER:PTHR31422	PANTHER:PTHR31422:SF0	PFAM:PF04576	PFscan:PS51775	PGSC:PGSC0003DMG400028131	RefSeq:XP_006339188.1
SEG:seg	UniParc:UPI0002951392	UniProt:M1CQ07	MapMan:35.1	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400028131]

Coordinates

chr10:-:56323026..56327870

Molecular Weight (calculated)

59091.7 Da

IEP (calculated)

5.785

GRAVY (calculated)

-0.699

Length

516 amino acids

Sequence
(BLAST)

001: MDSQNSPPTT SQVNCCYCGC SSCSAMNRSY SGTWLRSVKR KFDEYNENKF IIPGFVLPLN ARIEIENECT ALREMVSKQQ HTIQDLGAEL EEERNASSSA
101: ANEAMSMILR LQGEKAEVQM EFKQFKRYTE EKTAHDQQEI MALEDILYKR EQTIQSLTCE VQMYKHRMMS YGLTESEAEG DCETEKGRFS RNNSISETIN
201: GQFEVPPFDY PPLKCTINEN QVYTEFDNDT VDVEKYAFEE TPRSCDQLRD LEHRINQLER TPRSTDGDLF KNNILEKVIV GHSPRRNRHL RKFSTDSVGS
301: PFITNKEINS DFISDSPRFG GSIRKAEYSQ TEERSNLRKV DNSSEIGDDM SDRVYTIDSV HQGAGYNGVS ELKASAGMVD DYTPRDSLNN TDFGDPEVTK
401: LYFRLQALEA DRESMRQAMI AMRTDKAQVI LLKEIAQQFC KEMSPAVRKP AKKTSVIGSF SCMSVFKWVT CFVLWRRKAR RCKYPFGSST NNPGLLMLLD
501: KGPHVGQWRC LMSTQV

Best Arabidopsis Sequence Match ( AT5G06560.1 )
(BLAST)

001: MDLAIVSSPT RDVVRCCDCG CDCSLNGASP GSLLRSVKRK YEEFENEKLF HIPELELDLS SNAKVQIENE LELLRETVSS QQQSIQDLYE ELDEERNAAS
101: TAASEAMSMI LRLQRDKAEL QMELRQFKRF AEEKMEHDQQ ELLDLEDLIY KREQTIQALT FEAQAYKHRM MSFGFTEAEV ETEKNMLSRN PSMIENDYQY
201: DLPTSDYPPI KCNVNENPGP LEADIDVDDV EKYPLADSPH PLKTLERRIS QMERNPSFTQ PTGDVSGGRH YTEKNVVGQS PRHQRHFRRV STGSASSLLG
301: TTREKRLDFS NDSPRSNNGS FRKMEDPPYA AGNSFARDKG DSSEIGDNDM NDRVYTIDSV HHSVSHSGTA EQKFKNDTAD GYAMSPREIS NQPDLGDPEI
401: SKLYMRLQAL EADRESMRQA IMSMRTEKAQ MVLLKEIAQH LSKDVVPERR LPLRKTSIIG AFNFISVFKW ITSFVFWRRK ARRSKYMNGV QGNNMGLQML
501: LEKTPRIRQW RCLSSTQV

Arabidopsis Description

MYOB7Myosin-binding protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG14]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.