Factsheet for PGSC0003DMT400062848

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

nucleus 2
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	nucleus
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g113600.2.1	Tomato	golgi	94.82	94.98
PGSC0003DMT400030876	Potato	endoplasmic reticulum, extracellular	58.6	67.76
PGSC0003DMT400083120	Potato	endoplasmic reticulum	64.94	65.05
VIT_17s0000g05320.t01	Wine grape	endoplasmic reticulum, golgi	51.42	49.6
KRH54475	Soybean	endoplasmic reticulum	48.58	48.34
KRH63445	Soybean	endoplasmic reticulum	49.42	48.13
Bra003783.1-P	Field mustard	extracellular, plasma membrane	37.4	47.26
CDY26705	Canola	endoplasmic reticulum, plasma membrane, plastid	40.73	47.1
CDY19266	Canola	endoplasmic reticulum, nucleus, plasma membrane	40.73	46.83
AT1G18990.1	Thale cress	endoplasmic reticulum, plasma membrane	40.9	46.76
Bra025705.1-P	Field mustard	endoplasmic reticulum, plasma membrane, plastid	40.4	46.72
Bra031059.1-P	Field mustard	endoplasmic reticulum, vacuole	39.07	45.79
CDY21687	Canola	endoplasmic reticulum, vacuole	39.07	45.79
CDX85859	Canola	extracellular, plasma membrane, vacuole	37.4	45.44
CDX81908	Canola	endoplasmic reticulum, vacuole	37.73	45.29
CDX68162	Canola	extracellular, plasma membrane, vacuole	37.06	45.03
Bra015891.1-P	Field mustard	endoplasmic reticulum, golgi	40.57	44.75
CDY45396	Canola	extracellular, golgi, vacuole	40.07	44.28
AT1G74830.1	Thale cress	extracellular, golgi, vacuole	39.9	44.1
CDX73116	Canola	extracellular, golgi, vacuole	40.4	43.92
PGSC0003DMT400075922	Potato	endoplasmic reticulum, golgi	30.72	21.45
PGSC0003DMT400070777	Potato	golgi, plasma membrane, plastid	29.05	20.21
PGSC0003DMT400022326	Potato	nucleus	13.52	16.33
PGSC0003DMT400072288	Potato	plastid	13.52	15.7
PGSC0003DMT400023950	Potato	nucleus	11.02	14.83
PGSC0003DMT400028965	Potato	nucleus	10.85	14.35
PGSC0003DMT400080686	Potato	endoplasmic reticulum, golgi, plastid	26.38	13.73
PGSC0003DMT400011603	Potato	nucleus	11.35	13.33
PGSC0003DMT400020469	Potato	cytosol	9.85	8.5

Protein Annotations

EntrezGene:102601358	MapMan:20.2.4.3	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	GO:GO:0017022	InterPro:GTD-bd	InterPro:IPR007656
UniProt:M1C9M2	PFAM:PF04576	EnsemblPlantsGene:PGSC0003DMG400024464	PGSC:PGSC0003DMG400024464	EnsemblPlants:PGSC0003DMT400062848	PFscan:PS51775
PANTHER:PTHR31448	PANTHER:PTHR31448:SF9	TMHMM:TMhelix	UniParc:UPI00029673FD	RefSeq:XP_006344983.1	RefSeq:XP_015163146.1
SEG:seg	:	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400024464]

Coordinates

chr3:+:53474169..53477852

Molecular Weight (calculated)

67834.1 Da

IEP (calculated)

4.869

GRAVY (calculated)

-0.545

Length

599 amino acids

Sequence
(BLAST)

001: MASRSFKCLV EQKLGRVGVF CVYAVLEWVM ILLLFIDGFL ALFTNEFAKF FELKVPCLLC TRIDHIFIKR NSSFYYNESI CEGHKKDISS LAYCHVHKKL
101: SDIRNMCEGC LLSFATEKEA DCDKYKSLVG ILHKDIDCFV DDDKRMSIKS VKNEEEVIKT GSVVIRNCSC CGEPLKLRTK YARNSSINGN HYSQAPASSP
201: RSPLTWKNEE SGNMELPHIQ YTKLKFSSDN ESILPDDEGH QNAAGKEDTK AATAPLLPDP EDIHDESCKT PVSARNKFFG IPLTDSAQAS PKWPNKPRKL
301: GGDTSEFISD ANDTSAVNEA DDDILHSLKR QVRLDRKSLM ELYMELDEER SASAVAANNA MAMITRLQAE KAAVQMEALQ YQRMMEEQAE YDQEALQVMK
401: DLVLKREEEI KVLEAEMDTY RERYGVIKKV GSEVCEVDAD DDYQELRSQS ASSFDERSDC SSPREVDHNG VNELHIERPG EYRDENVDES NLDFENERSF
501: LQGLLANLEK KIKIPPDVES HVLESNVIQD KGNDNKVILT REVSLLRERL RAVEAESGFL KHAAMTLQRG GEGTKLLTEI AQHLRELRYT NTATEVADA

Best Arabidopsis Sequence Match ( AT1G74830.1 )
(BLAST)

001: MYIQLLCFFL FLFLLLQATM SKRSFKKFVE QELGSLPHFL IYTVLEWSLI VFLFIDGVIA FLSNQFAKFF DLNIPCLLCT RIDHILVPRD PQFYYNESIC
101: DSHKKKVSSL AYCHVHKKLS EIKHMCEGCL LSFATEKDSD CDTYKSLIGI LHKDLELLID DERDLPLAFK KDDNLVQTTK NLVDYKTNNI KNDSLKQHCS
201: CCGELLKIKS EKLPKNNNSF LAPAPSPRVS HNKLSENESE FKDMDVDRTP SFVRGGNKFF GIPLSDSAQN SPRWSVRSLK KSVLNKTENA SDTTDPTGES
301: ILNQLKKEVR LDKKSLIDLY MELDEERSAS AVAANEAMAM ITRLQAEKAA VQMEALQYQR MMDEQAEYDQ EALQSMSSEL AKREEEMKEL EAEFEVYREK
401: YGCLTDQEDA REEFHKQNGN ASAYDDCQET KPVSDLAVSS SNQQENGENI DQNGQSKRSE ESTAENVVSA DEEKGSESKE GIVKELSEIT ERLSTLQSNG
501: DLLKHIADVL DVSEGEAILL QISQNLHMLR SFVAMPSESM NL

Arabidopsis Description

MYOB6Probable myosin-binding protein 6 [Source:UniProtKB/Swiss-Prot;Acc:F4HVS6]
SUBAcon: [golgi,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.