Factsheet for Bra034886.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plasma membrane 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra032692.1-P	Field mustard	extracellular, plasma membrane	83.59	41.0
AT4G13160.1	Thale cress	endoplasmic reticulum	76.56	34.75
Bra006800.1-P	Field mustard	cytosol	16.41	12.96
PGSC0003DMT400011603	Potato	nucleus	49.22	12.35
Bra015360.1-P	Field mustard	endoplasmic reticulum, extracellular	50.0	12.26
Bra039233.1-P	Field mustard	nucleus	30.47	11.96
Bra032725.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	50.0	11.59
Bra006798.1-P	Field mustard	nucleus	27.34	11.44
Bra020409.1-P	Field mustard	nucleus	28.12	11.32
GSMUA_Achr6P06580_001	Banana	nucleus	25.0	10.7
TraesCS2A01G273300.1	Wheat	plastid	39.06	10.31
TraesCS2D01G272500.1	Wheat	plastid	39.06	10.31
KRH66087	Soybean	endoplasmic reticulum, plasma membrane	51.56	10.19
TraesCS2B01G291300.1	Wheat	plastid	38.28	10.1
KRH07498	Soybean	endoplasmic reticulum, plasma membrane	50.78	9.97
Bra007093.1-P	Field mustard	nucleus	31.25	9.85
GSMUA_Achr3P17210_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	46.88	9.82
Bra002694.1-P	Field mustard	nucleus	28.12	9.78
Bra002693.1-P	Field mustard	nucleus	28.12	9.78
Bra011226.1-P	Field mustard	cytosol	25.0	9.73
Zm00001d032786_P001	Maize	plastid	30.47	9.49
Bra014792.1-P	Field mustard	cytosol	28.91	9.3
Bra038684.1-P	Field mustard	nucleus	28.91	9.18
Bra028728.1-P	Field mustard	nucleus	28.91	9.09
Bra003783.1-P	Field mustard	extracellular, plasma membrane	32.81	8.86
Solyc12g098380.1.1	Tomato	extracellular, plasma membrane, vacuole	51.56	8.86
Bra031059.1-P	Field mustard	endoplasmic reticulum, vacuole	35.16	8.81
OQU91677	Sorghum	endoplasmic reticulum, golgi	32.81	8.75
HORVU2Hr1G066690.6	Barley	cytosol, mitochondrion	29.69	8.58
Zm00001d014088_P001	Maize	plastid	32.81	8.48
Bra009206.1-P	Field mustard	nucleus	28.12	8.43
Bra025705.1-P	Field mustard	endoplasmic reticulum, plasma membrane, plastid	33.59	8.3
Bra034805.1-P	Field mustard	nucleus	28.12	8.05
Bra015891.1-P	Field mustard	endoplasmic reticulum, golgi	32.03	7.55
Bra008601.1-P	Field mustard	endoplasmic reticulum, golgi, plastid	35.16	6.52
Bra018297.1-P	Field mustard	endoplasmic reticulum, extracellular	33.59	6.28
Bra021657.1-P	Field mustard	endoplasmic reticulum	34.38	5.93
Bra016190.1-P	Field mustard	mitochondrion	39.06	5.74
Bra018599.1-P	Field mustard	extracellular, vacuole	32.03	4.28
Bra030742.1-P	Field mustard	endoplasmic reticulum, mitochondrion, plastid, vacuole	33.59	3.73

Protein Annotations

EnsemblPlants:Bra034886.1	EnsemblPlants:Bra034886.1-P	EnsemblPlantsGene:Bra034886	InterPro:GTD-bd	InterPro:IPR007656	ncoils:Coil
PANTHER:PTHR31422	PANTHER:PTHR31422:SF3	PFAM:PF04576	PFscan:PS51775	SEG:seg	UniParc:UPI0002545642
UniProt:M4F1E0	MapMan:35.2	:	:	:	:

Description

AT4G13160 (E=2e-027) | unknown protein

Coordinates

chrA08:+:5691155..5691541

Molecular Weight (calculated)

14886.7 Da

IEP (calculated)

4.510

GRAVY (calculated)

-0.733

Length

128 amino acids

Sequence
(BLAST)

001: MAITSRTSVW YHQDQGDTKS SVGKDKNLEL MNKVRMLEEA IEEERLARSA LIVELEEERA ASASAADEAM AMNLRLQADK ASLEMEGKQY ERMIEEKFAY
101: DEEGINILKE ILFKREREKH FLEKELET

Best Arabidopsis Sequence Match ( AT4G13160.1 )
(BLAST)

001: MDYQESYRLT FYGILVAFME LAFAYCLLCV SAFVFITSKL LLFMPCIGYQ NSDLCIQKLL FDWPFRIILR VQKLATTNRP SVLHHQEQEQ EQEQEQEEKT
101: MVDKDKNSEL MDRVRLLEVA VEQEKVAKAA LMVELEQERA ASASAADEAM AMILRLQADK ASLEMEGKQY ERMIDEKFAY DEEEMNILKE ILFKREREKH
201: FLEKELETYK HIDDDQETED NEKRECDEDG EPIVYDVHVI EDNSQTKVRD DDVAEHKEMK EEEIVKDHDS VSSPTSSSTH LP

Arabidopsis Description

At4g13160 [Source:UniProtKB/TrEMBL;Acc:Q9SVR1]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.