Factsheet for Solyc12g009900.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400020469	Potato	cytosol	70.64	64.84
Solyc11g045470.1.1	Tomato	cytosol	6.12	46.43
CDX88641	Canola	nucleus	6.12	31.97
Bra006798.1-P	Field mustard	nucleus	13.81	28.76
CDY28219	Canola	cytosol	12.72	27.55
CDX68698	Canola	cytosol	12.56	27.21
Bra006800.1-P	Field mustard	cytosol	6.75	26.54
CDY50792	Canola	nucleus	15.23	26.36
Solyc07g005910.2.1	Tomato	nucleus	18.37	25.83
Bra002693.1-P	Field mustard	nucleus	14.91	25.82
CDY51277	Canola	nucleus	14.91	25.82
Bra020409.1-P	Field mustard	nucleus	12.87	25.79
AT4G30830.1	Thale cress	nucleus	14.6	25.62
Bra002694.1-P	Field mustard	nucleus	14.76	25.54
CDY32744	Canola	nucleus	14.44	25.14
AT5G57830.1	Thale cress	nucleus	15.07	24.81
CDX88643	Canola	nucleus	9.26	24.79
CDY02772	Canola	nucleus	14.13	24.59
CDY11846	Canola	nucleus	9.11	24.37
CDX72271	Canola	nucleus	14.44	23.83
Bra011226.1-P	Field mustard	cytosol	12.24	23.71
VIT_11s0037g00610.t01	Wine grape	nucleus	17.43	23.67
KRH12784	Soybean	nucleus	16.8	23.46
CDY13389	Canola	nucleus	14.76	23.38
CDY34794	Canola	nucleus	11.77	23.01
Bra039233.1-P	Field mustard	nucleus	11.77	23.01
CDX76832	Canola	nucleus	11.62	22.98
KRH37764	Soybean	nucleus	16.33	22.71
Solyc11g020850.1.1	Tomato	nucleus	18.68	22.67
KRH63109	Soybean	nucleus	16.17	22.34
KRH72337	Soybean	nucleus	16.33	22.17
KRH03013	Soybean	nucleus	16.48	22.15
AT2G24140.2	Thale cress	nucleus	11.15	21.91
Solyc10g081620.1.1	Tomato	cytosol, plastid	16.48	20.35
Solyc11g045480.1.1	Tomato	mitochondrion	5.97	18.72
GSMUA_Achr10P...	Banana	nucleus	13.66	18.05
KRH55008	Soybean	cytosol	4.55	18.01
Os08t0269000-01	Rice	cytosol, golgi, nucleus	8.01	17.59
TraesCS5B01G405000.1	Wheat	nucleus	10.2	17.24
TraesCS5A01G400200.1	Wheat	nucleus	10.2	17.15
TraesCS5D01G410200.1	Wheat	nucleus	10.2	17.15
TraesCS7D01G282800.1	Wheat	nucleus	11.3	16.51
TraesCS7B01G199800.1	Wheat	nucleus	11.46	16.48
Zm00001d024102_P002	Maize	nucleus	8.95	16.1
TraesCS7A01G285400.1	Wheat	nucleus	11.15	16.03
Os08t0442350-01	Rice	nucleus	12.24	15.66
HORVU5Hr1G097200.5	Barley	cytosol	10.52	15.65
OQU80230	Sorghum	cytosol	9.42	15.0
OQU80548	Sorghum	nucleus	12.24	14.77
Solyc12g098380.1.1	Tomato	extracellular, plasma membrane, vacuole	14.76	12.62
Zm00001d032145_P001	Maize	nucleus	12.09	12.44
Solyc12g027730.1.1	Tomato	endoplasmic reticulum, extracellular, plasma membrane	8.95	10.98
Solyc03g113600.2.1	Tomato	golgi	9.26	9.87
Solyc06g071190.2.1	Tomato	endoplasmic reticulum, golgi, plasma membrane	9.11	9.08
Solyc01g097040.2.1	Tomato	golgi, plasma membrane, plastid	10.36	7.24
Solyc04g007870.2.1	Tomato	endoplasmic reticulum, golgi	9.42	7.21
CDY31127	Canola	cytosol	6.59	6.46
Solyc09g066140.2.1	Tomato	endoplasmic reticulum, extracellular, plasma membrane	10.2	5.44
CDY31126	Canola	endoplasmic reticulum, mitochondrion, plastid, vacuole	0.16	0.51

Protein Annotations

EnsemblPlants:Solyc12g009900.1.1	EnsemblPlantsGene:Solyc12g009900.1	InterPro:GTD-bd	InterPro:IPR007656	ncoils:Coil	PANTHER:PTHR31422
PANTHER:PTHR31422:SF1	PFAM:PF04576	PFscan:PS51775	SEG:seg	UniParc:UPI0002769B3D	UniProt:K4DC78
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chr12:+:3074706..3076907

Molecular Weight (calculated)

74584.5 Da

IEP (calculated)

5.158

GRAVY (calculated)

-0.870

Length

637 amino acids

Sequence
(BLAST)

001: MADIGKAVSR FDVESLQEML CFQEQLIEKL YNELDEESEA SSTAATEALS MILRLQGEKA AEEMEAEQYK RFVEEKMSHA EESLCVLQEL IDQKQIKIDE
101: LDHQAQDYRY KLVSMGYDDD IDDSELEYFE DLEGKLIVQS IGRCKSTPNI PLKDDNMKKD DLKDENISPK RDMNDVPMVG SISVYCEQME KLEQRVKQIA
201: GANNYAKLSS LPISKRSSCN NFLEQFKETY IVQHRVNKSD NEAAASRSVS PPNVLDVFEV PRAIKDEDFV VRKEAERLVK DETDWHKKYL IPMQHLDICP
301: TTSASETAEI RHFNRTVFEI DEVERQGTRQ EPDKHEELMM LHDIKEKLNL EPLKHLKVCP MTSDSETEEI RRVNRSTFKK TEVERQGTRQ EPNRHKELML
401: LHDRKEQLNL VPIKHLKNCP MTHASETAEI RHVNKKFEIA EVERHDTRQE PERNKELMLL HDRKEQLNIV PIRHLNNCPM TNASETAEIH RVNKKFEIAE
501: VERDGTRKVE RHGTRQETER HKEIMLLHDI KEQLNLLPMQ NEDKLHRVGE ATSPTTSVSE TAEIRPVNRT TLEITEVDRQ RMRQESNRHE QLTLLYEIKE
601: QLNLMQSDIR TWKNIKSSPR DEPSVDSLTE VMACFWM

Best Arabidopsis Sequence Match ( AT5G57830.1 )
(BLAST)

001: MVERTMSLGV GGNGETSGVR ETMWAQQELL QKINQELDAE REASSSAASE ALSMILRLQG EKAALEMEAS QYKRMAEEKM CHAETSLVLF EDLIYQKEME
101: IASLEFQVQA YRCKLLSLGC SDPAVIENKF PETLIFSGEN SRGNQKRKMK RNLSSPFDGI SSERSLLLSD VNGESFEEKK GLVESSSVSP REDLNAYWEQ
201: IRRIDEHVRE ISDSRDTQKA SKFPLIRRES ISHALVSQVS NTILESAKSD VSSIMEMMKN PERFSVKDAS LETPILSPKN VQDIFEVPRT KESLTIISEE
301: EEAEERNVRG KMVTSNYDRK VSKPPRDTSI KGEHLSLLKE IREQLNVMQS EMRSLRSELH HQSKPVSNPE EDLVLNSIQE AMIHFWL

Arabidopsis Description

Protein of unknown function, DUF593 [Source:TAIR;Acc:AT5G57830]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.