Factsheet for Solyc11g020850.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400023950	Potato	nucleus	80.0	94.38
Solyc07g005910.2.1	Tomato	nucleus	72.38	83.89
Solyc11g045470.1.1	Tomato	cytosol	7.43	46.43
CDX88641	Canola	nucleus	10.1	43.44
VIT_11s0037g00610.t01	Wine grape	nucleus	38.67	43.28
Bra006798.1-P	Field mustard	nucleus	23.43	40.2
CDY50792	Canola	nucleus	26.86	38.32
AT5G57830.1	Thale cress	nucleus	28.0	37.98
CDY51277	Canola	nucleus	26.48	37.77
Bra006800.1-P	Field mustard	cytosol	11.62	37.65
Bra002693.1-P	Field mustard	nucleus	26.29	37.5
Bra002694.1-P	Field mustard	nucleus	26.29	37.5
CDY32744	Canola	nucleus	26.1	37.43
CDY02772	Canola	nucleus	25.71	36.89
Bra020409.1-P	Field mustard	nucleus	22.1	36.48
KRH63109	Soybean	nucleus	30.67	34.92
KRH72337	Soybean	nucleus	30.86	34.54
KRH37764	Soybean	nucleus	29.9	34.28
KRH12784	Soybean	nucleus	29.71	34.21
KRH03013	Soybean	nucleus	30.86	34.18
CDY11846	Canola	nucleus	15.24	33.61
CDX88643	Canola	nucleus	15.24	33.61
CDY28219	Canola	cytosol	18.1	32.31
CDX68698	Canola	cytosol	18.1	32.31
CDX76832	Canola	nucleus	19.05	31.06
CDY34794	Canola	nucleus	19.24	30.98
Bra039233.1-P	Field mustard	nucleus	19.24	30.98
KRH55008	Soybean	cytosol	9.33	30.43
AT4G30830.1	Thale cress	nucleus	20.19	29.2
CDX72271	Canola	nucleus	20.95	28.5
AT2G24140.2	Thale cress	nucleus	17.52	28.4
Bra011226.1-P	Field mustard	cytosol	17.71	28.27
CDY13389	Canola	nucleus	20.19	26.37
Os08t0269000-01	Rice	cytosol, golgi, nucleus	12.57	22.76
GSMUA_Achr10P...	Banana	nucleus	20.0	21.78
TraesCS5D01G410200.1	Wheat	nucleus	15.62	21.64
TraesCS5A01G400200.1	Wheat	nucleus	15.62	21.64
TraesCS5B01G405000.1	Wheat	nucleus	15.24	21.22
OQU80230	Sorghum	cytosol	15.43	20.25
TraesCS7D01G282800.1	Wheat	nucleus	16.76	20.18
TraesCS7B01G199800.1	Wheat	nucleus	16.76	19.86
TraesCS7A01G285400.1	Wheat	nucleus	16.76	19.86
Zm00001d024102_P002	Maize	nucleus	13.14	19.49
Os08t0442350-01	Rice	nucleus	18.29	19.28
HORVU5Hr1G097200.5	Barley	cytosol	15.62	19.16
Solyc10g081620.1.1	Tomato	cytosol, plastid	18.67	18.99
Solyc12g009900.1.1	Tomato	cytosol	22.67	18.68
OQU80548	Sorghum	nucleus	17.33	17.23
Zm00001d032145_P001	Maize	nucleus	17.52	14.86
Solyc12g027730.1.1	Tomato	endoplasmic reticulum, extracellular, plasma membrane	11.81	11.95
Solyc03g113600.2.1	Tomato	golgi	12.38	10.87
Solyc11g045480.1.1	Tomato	mitochondrion	4.19	10.84
Solyc06g071190.2.1	Tomato	endoplasmic reticulum, golgi, plasma membrane	12.57	10.33
Solyc12g098380.1.1	Tomato	extracellular, plasma membrane, vacuole	13.9	9.8
Solyc04g007870.2.1	Tomato	endoplasmic reticulum, golgi	14.1	8.89
Solyc01g097040.2.1	Tomato	golgi, plasma membrane, plastid	13.33	7.68
CDY31127	Canola	cytosol	8.95	7.23
Solyc09g066140.2.1	Tomato	endoplasmic reticulum, extracellular, plasma membrane	13.14	5.77
CDY31126	Canola	endoplasmic reticulum, mitochondrion, plastid, vacuole	0.19	0.51

Protein Annotations

EnsemblPlants:Solyc11g020850.1.1	EnsemblPlantsGene:Solyc11g020850.1	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:GTD-bd
InterPro:IPR007656	ncoils:Coil	PANTHER:PTHR31422	PANTHER:PTHR31422:SF1	PFAM:PF04576	PFscan:PS51775
SEG:seg	TMHMM:TMhelix	UniParc:UPI0002769653	UniProt:K4D736	MapMan:35.1	:

Description

No Description!

Coordinates

chr11:+:12806393..12808559

Molecular Weight (calculated)

59500.8 Da

IEP (calculated)

5.359

GRAVY (calculated)

-0.540

Length

525 amino acids

Sequence
(BLAST)

001: MAESYTSQLD VASLKETLCA QQQLLQKLYN ELDEEREASS SAASEALSMI VRLQGEKAAV KMEAEQYKRL AEEKMCHAEE SLDIFEDLFN QKEMEIAALE
101: YQVQAYRYKL LSTGCADPGV GEFKYPDNLL QRNETLAGEM NPQALGRRNS APHFPLKFPK KGALEIDDSS LERESNSKTV DEYTGQEMNE QQSDTAKKTD
201: ISRTESINSC WQQIRKLDDR VKEITGVSYA NLRSETRSPS PLSQRSMKIS KSENEMYQPK LHVSKSETGT PSDSGCSPNV LDVFEVPRAE KDTVDIGLPP
301: KHDRKMVLHN DERLERPDSV QQEAVKSSVK DEAELLKKYF VAAQREKKLR RASEAASISC HLAISRPTTS ISGTNELHLH NRTSEIGEVG REATRQEMAR
401: EELKLLHEIK EQLNLMHSEI QRLKTDKLPP IDESSLLPLS EPLHVKLLPS SMKPRALLLE VSLRMVIVDY EVLALSTIYL LCYCFSMFLP LWLYYIMYQC
501: SSTIGSISVN SRLVFSTNSP IALSW

Best Arabidopsis Sequence Match ( AT5G57830.1 )
(BLAST)

001: MVERTMSLGV GGNGETSGVR ETMWAQQELL QKINQELDAE REASSSAASE ALSMILRLQG EKAALEMEAS QYKRMAEEKM CHAETSLVLF EDLIYQKEME
101: IASLEFQVQA YRCKLLSLGC SDPAVIENKF PETLIFSGEN SRGNQKRKMK RNLSSPFDGI SSERSLLLSD VNGESFEEKK GLVESSSVSP REDLNAYWEQ
201: IRRIDEHVRE ISDSRDTQKA SKFPLIRRES ISHALVSQVS NTILESAKSD VSSIMEMMKN PERFSVKDAS LETPILSPKN VQDIFEVPRT KESLTIISEE
301: EEAEERNVRG KMVTSNYDRK VSKPPRDTSI KGEHLSLLKE IREQLNVMQS EMRSLRSELH HQSKPVSNPE EDLVLNSIQE AMIHFWL

Arabidopsis Description

Protein of unknown function, DUF593 [Source:TAIR;Acc:AT5G57830]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.