Factsheet for VIT_11s0037g00610.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88641	Canola	nucleus	13.65	52.46
Bra006798.1-P	Field mustard	nucleus	31.77	48.69
Bra006800.1-P	Field mustard	cytosol	16.2	46.91
PGSC0003DMT400028965	Potato	nucleus	44.78	46.36
Solyc07g005910.2.1	Tomato	nucleus	44.56	46.14
CDY51277	Canola	nucleus	35.82	45.65
Bra002693.1-P	Field mustard	nucleus	35.82	45.65
CDY32744	Canola	nucleus	35.61	45.63
PGSC0003DMT400023950	Potato	nucleus	43.28	45.62
CDY02772	Canola	nucleus	35.39	45.36
CDY50792	Canola	nucleus	35.39	45.11
Bra020409.1-P	Field mustard	nucleus	30.49	44.97
CDX88643	Canola	nucleus	22.81	44.96
CDY11846	Canola	nucleus	22.81	44.96
Bra002694.1-P	Field mustard	nucleus	34.97	44.57
AT5G57830.1	Thale cress	nucleus	36.25	43.93
KRH72337	Soybean	nucleus	43.5	43.5
KRH03013	Soybean	nucleus	43.07	42.62
CDY28219	Canola	cytosol	26.44	42.18
KRH63109	Soybean	nucleus	40.72	41.43
KRH37764	Soybean	nucleus	40.3	41.27
CDX68698	Canola	cytosol	25.59	40.82
KRH12784	Soybean	nucleus	39.66	40.79
KRH55008	Soybean	cytosol	13.86	40.37
CDY34794	Canola	nucleus	27.08	38.96
Solyc11g020850.1.1	Tomato	nucleus	43.28	38.67
AT2G24140.2	Thale cress	nucleus	26.44	38.27
CDX76832	Canola	nucleus	26.01	37.89
Bra011226.1-P	Field mustard	cytosol	26.44	37.69
Bra039233.1-P	Field mustard	nucleus	26.01	37.42
CDX72271	Canola	nucleus	28.78	34.97
AT4G30830.1	Thale cress	nucleus	26.87	34.71
CDY13389	Canola	nucleus	28.36	33.08
TraesCS5B01G405000.1	Wheat	nucleus	21.11	26.26
TraesCS5D01G410200.1	Wheat	nucleus	21.11	26.12
TraesCS5A01G400200.1	Wheat	nucleus	21.11	26.12
Os08t0269000-01	Rice	cytosol, golgi, nucleus	15.78	25.52
GSMUA_Achr10P...	Banana	nucleus	25.37	24.69
TraesCS7D01G282800.1	Wheat	nucleus	22.17	23.85
TraesCS7A01G285400.1	Wheat	nucleus	22.17	23.48
TraesCS7B01G199800.1	Wheat	nucleus	21.96	23.25
Zm00001d024102_P002	Maize	nucleus	17.48	23.16
HORVU5Hr1G097200.5	Barley	cytosol	20.68	22.66
Os08t0442350-01	Rice	nucleus	22.6	21.29
OQU80230	Sorghum	cytosol	18.12	21.25
OQU80548	Sorghum	nucleus	22.81	20.27
VIT_08s0032g00720.t01	Wine grape	plastid	20.47	18.46
Solyc12g009900.1.1	Tomato	cytosol	23.67	17.43
Zm00001d032145_P001	Maize	nucleus	21.11	15.99
PGSC0003DMT400020469	Potato	cytosol	23.45	15.85
VIT_17s0000g05320.t01	Wine grape	endoplasmic reticulum, golgi	14.93	11.27
VIT_14s0081g00320.t01	Wine grape	nucleus	15.78	10.18
VIT_14s0006g00920.t01	Wine grape	endoplasmic reticulum, golgi	18.55	9.55
VIT_05s0029g00110.t01	Wine grape	endoplasmic reticulum, golgi	15.35	9.03
VIT_07s0141g00860.t01	Wine grape	golgi	14.5	8.9
VIT_01s0011g05340.t01	Wine grape	endoplasmic reticulum, golgi	18.98	8.32
CDY31127	Canola	cytosol	10.23	7.38
CDY31126	Canola	endoplasmic reticulum, mitochondrion, plastid, vacuole	0.43	1.01

Protein Annotations

EntrezGene:100251975	wikigene:100251975	MapMan:35.2	EMBL:AM426450	ProteinID:CAN60219	ProteinID:CAN60219.1
ProteinID:CCB59775	ProteinID:CCB59775.1	ncoils:Coil	UniProt:F6HYL1	EMBL:FN596499	InterPro:GTD-bd
InterPro:IPR007656	EntrezGene:LOC100251975	wikigene:LOC100251975	PFAM:PF04576	PFscan:PS51775	PANTHER:PTHR31422
PANTHER:PTHR31422:SF1	UniParc:UPI000210AA69	ArrayExpress:VIT_11s0037g00610	EnsemblPlantsGene:VIT_11s0037g00610	EnsemblPlants:VIT_11s0037g00610.t01	RefSeq:XP_002274666
RefSeq:XP_002274666.1	RefSeq:XP_010656624.1	RefSeq:XP_010656625.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr11:+:8612905..8614836

Molecular Weight (calculated)

53287.2 Da

IEP (calculated)

4.852

GRAVY (calculated)

-0.656

Length

469 amino acids

Sequence
(BLAST)

001: MAESNTSLGT PETDMTTLKE ALWAQQQLLQ KLYSELDEER EASATAASET LSMILRLQGE KAAVKMEASQ YKRMAEERMC HAEKSLSLFE ELIYQKEMEI
101: ASLEFQVQAY RCKLLSMGYS DPVAGDTRFP DNLLLQRNES LVGDTSVNDI VRRSNSLPSI RLKDSYHKKA IIERERSMIP LIPRIVEENM DQELGDQNFD
201: LEKKSENSSA VGDYDSYWEQ IRRLDKKVKE LSDCKDSSRG GKSANLKAGS RSSLPSQVSM TSYDLTSGDM TTKSGKVKHP GGFLEDGAIT NSACAFGVHD
301: IFEVPKAIKN HKSCERMKKE QSKLILEDED RLLMPDSVSK EAAESYIRDE TDWEKESFLS ANHENRLIKP KHGMAFESDL AFPCSTIGVA ECQAEFQQLV
401: RRMKQLEDER EIIRQDNGGE EELKLLREIH EKLNLIQSEI ESLRPKKRSP PPDDPALVSL MEAMLCFWL

Best Arabidopsis Sequence Match ( AT5G57830.1 )
(BLAST)

001: MVERTMSLGV GGNGETSGVR ETMWAQQELL QKINQELDAE REASSSAASE ALSMILRLQG EKAALEMEAS QYKRMAEEKM CHAETSLVLF EDLIYQKEME
101: IASLEFQVQA YRCKLLSLGC SDPAVIENKF PETLIFSGEN SRGNQKRKMK RNLSSPFDGI SSERSLLLSD VNGESFEEKK GLVESSSVSP REDLNAYWEQ
201: IRRIDEHVRE ISDSRDTQKA SKFPLIRRES ISHALVSQVS NTILESAKSD VSSIMEMMKN PERFSVKDAS LETPILSPKN VQDIFEVPRT KESLTIISEE
301: EEAEERNVRG KMVTSNYDRK VSKPPRDTSI KGEHLSLLKE IREQLNVMQS EMRSLRSELH HQSKPVSNPE EDLVLNSIQE AMIHFWL

Arabidopsis Description

Protein of unknown function, DUF593 [Source:TAIR;Acc:AT5G57830]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.