Factsheet for Bra007246.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 7
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX72137	Canola	endoplasmic reticulum	56.64	99.52
CDY27214	Canola	plastid	68.02	93.66
Bra004587.1-P	Field mustard	mitochondrion, plastid	73.98	75.62
AT3G56430.1	Thale cress	mitochondrion	78.59	66.82
GSMUA_Achr8P21420_001	Banana	endoplasmic reticulum, golgi	46.07	64.39
KRH64227	Soybean	mitochondrion	57.72	63.2
KRH53699	Soybean	mitochondrion	57.72	62.83
PGSC0003DMT400013467	Potato	plastid	57.72	57.57
Solyc03g095470.2.1	Tomato	plastid	57.18	57.49
VIT_13s0067g00210.t01	Wine grape	mitochondrion, plastid	58.27	56.28
Zm00001d008689_P003	Maize	mitochondrion	54.74	53.44
TraesCS3B01G111500.1	Wheat	mitochondrion, plastid	55.28	53.26
Os01t0168300-01	Rice	mitochondrion	54.47	52.89
TraesCS3D01G096200.1	Wheat	mitochondrion	54.2	52.08
Zm00001d039709_P001	Maize	mitochondrion	53.66	51.83
EES00240	Sorghum	mitochondrion	53.93	51.69
TraesCS3A01G095800.1	Wheat	mitochondrion	53.66	51.56
HORVU3Hr1G017300.2	Barley	mitochondrion, plastid	53.66	47.71
CDY20610	Canola	plasma membrane	15.18	46.28
GSMUA_Achr10P...	Banana	mitochondrion	37.67	45.28
Bra016969.1-P	Field mustard	mitochondrion	17.34	32.65

Protein Annotations

EnsemblPlants:Bra007246.1	EnsemblPlants:Bra007246.1-P	EnsemblPlantsGene:Bra007246	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005773	GO:GO:0009536	GO:GO:0016020	GO:GO:0016021
ncoils:Coil	PANTHER:PTHR36354	SEG:seg	TMHMM:TMhelix	UniParc:UPI0002542B8B	UniProt:M4CSQ4
MapMan:35.2	:	:	:	:	:

Description

AT2G40800 (E=8e-148) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial import inner membrane translocase, subunit Tim21 (InterPro:IPR013261); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G56430.1); Has 21 Blast hits to 21 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

Coordinates

chrA09:-:28187200..28188765

Molecular Weight (calculated)

40893.7 Da

IEP (calculated)

10.351

GRAVY (calculated)

-0.080

Length

369 amino acids

Sequence
(BLAST)

001: MVKSSDFKAV HRFIQLHYTR VVNPVTVSRS KLFVSSSPAA FPSNGFTQFH PKSSFHNFSS IPTTKSLSFY QICGLASAKP GVKNVNFASA LRLFSTSGFR
101: KVDGSFARKV VEKPMKAVSS SVGRYRVALG LHVDAFWKKN SLVVFGAGGV FVCIFLWRIM FGIASTFVGL SEGMAKYGFL ALSSAIVAFA GLYLRARFTI
201: NPDKVYRIAM RKLNTAANIL EVMGAPLTGS DLRAYVMSGG GITLKKFKPT IRSKRCFLLF PVQGAERKGL VSVEVKKKKG QYDMKLLAVD IPMASGPDQR
301: LFLIGDEEEY RVGGGLISEL RDPVVKAMAA AKEFDNLDRI EDEEDEEREL QEAERKQREE TEKLEKDSS

Best Arabidopsis Sequence Match ( AT2G40800.1 )
(BLAST)

001: MVKPSDFKAI QGFIRLHYTR VNPVTIGRSN PSALSSPAIP SNGVSQLQPK FSFHSLSSKP TSKNVGLYQI LSSPKLNPKL QQALGLPRVN VSFASAFRLV
101: STKSSGFRKV DGSFARKVVD KPVKAVSSTF ARYREAIGLH IDAFWKKNSL VVFGAAGVFV CIFLWRIMFG IASTFVGLSE GMAKYGFLAL SSAIVAFSGL
201: YLRSRFTINP DKVYRMTMRK INTAAEILEV MGAPLSGSDL RAYVMSGGGI TFKKFKPTIR SKRCFLLFPV QGSEQKGLVS VEVKKKKGQY DMKLLAVDIP
301: MASGPDQRLF LIGDEEEYRI GGGLISVLRD PVVKAMAATK EFDNLDRIEE EEDAERELQE AERKHREEIE KLEKEGS

Arabidopsis Description

Import inner membrane translocase subunit [Source:UniProtKB/TrEMBL;Acc:Q9SHB0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.