Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi
Predictor Summary:
Predictor Summary:
- cytosol 1
- extracellular 4
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 4
- golgi 5
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX72137 | Canola | endoplasmic reticulum | 60.98 | 76.67 |
| CDY09265 | Canola | cytosol | 27.65 | 65.18 |
| CDY36983 | Canola | mitochondrion | 32.58 | 64.66 |
| CDY03525 | Canola | mitochondrion | 32.2 | 63.91 |
| CDY40525 | Canola | mitochondrion | 31.82 | 63.16 |
| CDY27214 | Canola | plastid | 63.26 | 62.31 |
| Os01t0168300-01 | Rice | mitochondrion | 67.42 | 46.84 |
| Zm00001d039709_P001 | Maize | mitochondrion | 67.42 | 46.6 |
| KRH53699 | Soybean | mitochondrion | 59.47 | 46.31 |
| Zm00001d008689_P003 | Maize | mitochondrion | 66.29 | 46.3 |
| KRH64227 | Soybean | mitochondrion | 59.09 | 46.29 |
| Bra007246.1-P | Field mustard | mitochondrion | 64.39 | 46.07 |
| EES00240 | Sorghum | mitochondrion | 66.67 | 45.71 |
| TraesCS3A01G095800.1 | Wheat | mitochondrion | 64.77 | 44.53 |
| TraesCS3D01G096200.1 | Wheat | mitochondrion | 64.77 | 44.53 |
| TraesCS3B01G111500.1 | Wheat | mitochondrion, plastid | 64.39 | 44.39 |
| CDX79970 | Canola | mitochondrion, plastid | 60.23 | 44.04 |
| Bra004587.1-P | Field mustard | mitochondrion, plastid | 60.23 | 44.04 |
| CDY23881 | Canola | plastid | 60.23 | 43.92 |
| PGSC0003DMT400013467 | Potato | plastid | 60.98 | 43.51 |
| Solyc03g095470.2.1 | Tomato | plastid | 60.23 | 43.32 |
| AT2G40800.1 | Thale cress | mitochondrion | 59.47 | 41.64 |
| VIT_13s0067g00210.t01 | Wine grape | mitochondrion, plastid | 59.85 | 41.36 |
| HORVU3Hr1G017300.2 | Barley | mitochondrion, plastid | 64.39 | 40.96 |
| GSMUA_Achr10P... | Banana | mitochondrion | 46.59 | 40.07 |
| AT3G56430.1 | Thale cress | mitochondrion | 61.36 | 37.33 |
| CDY20610 | Canola | plasma membrane | 15.15 | 33.06 |
| Bra016969.1-P | Field mustard | mitochondrion | 20.08 | 27.04 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr8P21420_001 | EnsemblPlants:GSMUA_Achr8T21420_001 | EnsemblPlantsGene:GSMUA_Achr8G21420_001 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| ncoils:Coil | PANTHER:PTHR36354 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000296D5F8 | UniProt:M0TSE5 |
| MapMan:35.2 | : | : | : | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr8G21420_001]
Coordinates
chr8:-:26304922..26310259
Molecular Weight (calculated)
29303.8 Da
IEP (calculated)
9.239
GRAVY (calculated)
-0.013
Length
264 amino acids
Sequence
(BLAST)
(BLAST)
001: MILVWSGAVV VCIVLWRIMF GIASTFVGLS EGTAKYGFLA LASAIVAFAG MCFRARFAIN PDKVYRLAMS KLNASAGILE VMGAPLTGTD LRAYVTSGGQ
101: PKLKNFKLKF GDKRCFLLFP VRGSERKGLV SVEVKKKKGQ YVMKLLAVDI PMASGPDQRL FVLGDEQEYR VGGGLISELR DPIVKAMSAE KEFQDLDQKE
201: DEEDEIRERE EAERRQQKFT TGFFSSQSSH NSFCISATKC CFLIADLKVI ASCPPYARHL QRSQ
101: PKLKNFKLKF GDKRCFLLFP VRGSERKGLV SVEVKKKKGQ YVMKLLAVDI PMASGPDQRL FVLGDEQEYR VGGGLISELR DPIVKAMSAE KEFQDLDQKE
201: DEEDEIRERE EAERRQQKFT TGFFSSQSSH NSFCISATKC CFLIADLKVI ASCPPYARHL QRSQ
001: MVKPSDFKAV HKLIQLHYSR VNLFTTTGWS KLSALSSPAL PSNGVSQLQP KSGFHTFSSR PTSKNFGLSQ ILPSNGVSQL QPKTSFHSFL SRPTSKNVGL
101: SQILPSPKLV PGLQNCGVAL VKPRVNMNFV SAFRLFSSSG FRKVDGNFAR KVVDKPIKAV SSTFARYRMA LGLHVDAFWK KNNLLVFGAG AVFVCIFLWR
201: VMFGIASTFV GLSEGMAKYG FLALSSAIVA FAGLYLRARF TINPDKVYRI TMRKLNTAAD VLEVMGAPLA GSDLRAYVMS GGGITFKKFK PTIRNKRCFL
301: LFPVQGSERK GLVSVEVKKK KGQYDMKLLA VDIPMASGPD QRLFLIGDEE EYRVGGGLIS ELRDPVVKAM AATKEFDNLD RIEEEEDAER ELQEAERKER
401: EEIELQEAER KEREEFELQE AERKQREEIE KLEK
101: SQILPSPKLV PGLQNCGVAL VKPRVNMNFV SAFRLFSSSG FRKVDGNFAR KVVDKPIKAV SSTFARYRMA LGLHVDAFWK KNNLLVFGAG AVFVCIFLWR
201: VMFGIASTFV GLSEGMAKYG FLALSSAIVA FAGLYLRARF TINPDKVYRI TMRKLNTAAD VLEVMGAPLA GSDLRAYVMS GGGITFKKFK PTIRNKRCFL
301: LFPVQGSERK GLVSVEVKKK KGQYDMKLLA VDIPMASGPD QRLFLIGDEE EYRVGGGLIS ELRDPVVKAM AATKEFDNLD RIEEEEDAER ELQEAERKER
401: EEIELQEAER KEREEFELQE AERKQREEIE KLEK
Arabidopsis Description
At3g56430 [Source:UniProtKB/TrEMBL;Acc:Q9LXZ7]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.