Factsheet for VIT_13s0067g00210.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX72137	Canola	endoplasmic reticulum	46.07	83.81
CDY36983	Canola	mitochondrion	29.06	83.46
CDY03525	Canola	mitochondrion	28.8	82.71
CDY09265	Canola	cytosol	24.08	82.14
CDY40525	Canola	mitochondrion	28.53	81.95
CDY27214	Canola	plastid	52.09	74.25
KRH53699	Soybean	mitochondrion	57.85	65.19
KRH64227	Soybean	mitochondrion	56.54	64.09
GSMUA_Achr8P21420_001	Banana	endoplasmic reticulum, golgi	41.36	59.85
Solyc03g095470.2.1	Tomato	plastid	57.07	59.4
Bra004587.1-P	Field mustard	mitochondrion, plastid	55.24	58.45
CDX79970	Canola	mitochondrion, plastid	55.24	58.45
PGSC0003DMT400013467	Potato	plastid	56.54	58.38
Bra007246.1-P	Field mustard	mitochondrion	56.28	58.27
CDY23881	Canola	plastid	54.97	58.01
AT2G40800.1	Thale cress	mitochondrion	56.81	57.56
Os01t0168300-01	Rice	mitochondrion	54.45	54.74
Zm00001d008689_P003	Maize	mitochondrion	53.93	54.5
EES00240	Sorghum	mitochondrion	54.71	54.29
Zm00001d039709_P001	Maize	mitochondrion	53.66	53.66
TraesCS3B01G111500.1	Wheat	mitochondrion, plastid	53.14	53.0
TraesCS3D01G096200.1	Wheat	mitochondrion	53.14	52.86
TraesCS3A01G095800.1	Wheat	mitochondrion	52.36	52.08
AT3G56430.1	Thale cress	mitochondrion	55.76	49.08
HORVU3Hr1G017300.2	Barley	mitochondrion, plastid	52.09	47.95
GSMUA_Achr10P...	Banana	mitochondrion	37.96	47.23
CDY20610	Canola	plasma membrane	12.83	40.5
Bra016969.1-P	Field mustard	mitochondrion	15.71	30.61

Protein Annotations

ArrayExpress:VIT_13s0067g00210	EMBL:FN595514	EnsemblPlants:VIT_13s0067g00210.t01	EnsemblPlantsGene:VIT_13s0067g00210	EntrezGene:100265611	EntrezGene:LOC100265611
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	ncoils:Coil	PANTHER:PTHR36354	ProteinID:CCB49888
ProteinID:CCB49888.1	RefSeq:XP_002270952	RefSeq:XP_002270952.1	SEG:seg	TMHMM:TMhelix	unigene:Vvi.1801
UniParc:UPI00015CB05A	UniProt:F6HC08	wikigene:100265611	wikigene:LOC100265611	MapMan:35.2	:

Description

No Description!

Coordinates

chr13:+:141907..145880

Molecular Weight (calculated)

42521.7 Da

IEP (calculated)

10.153

GRAVY (calculated)

-0.190

Length

382 amino acids

Sequence
(BLAST)

001: MAKPPQRLFQ HHSQFLGLLR SHINRLHFHD KPSISLPAGG SLSPSSAIRG PDPLSTTLCF SSRVESFQIQ SKRLSKPYPI PPIFSSGFGA RLYANSSGLR
101: YFSSGGWNLG KAQTNANFPK AFLDLPLRSL RSAFYRYREA VGLQIEAFWK RNYVFLLGAG GVVLCAVLWR AMFGIATTFV GLSEGMAKYG FLALSASIVA
201: FSGLYIRSRL TINPDKVYRI AMRKLNTSAG ILEVMGAPLT GTDLRAYVMS GGGLSLKKFK PTLRSKRCFL IFPIRGSERR GLVSIEVKKK KGEYDMKLLA
301: VDIPMATGPD QRLFLIGDEE EYKVGGGLIS ELRDPVVKAM AATKEFEELD QIEEEEDAER ELQEAERKHR EEIEKLEKGA PQ

Best Arabidopsis Sequence Match ( AT3G56430.1 )
(BLAST)

001: MVKPSDFKAV HKLIQLHYSR VNLFTTTGWS KLSALSSPAL PSNGVSQLQP KSGFHTFSSR PTSKNFGLSQ ILPSNGVSQL QPKTSFHSFL SRPTSKNVGL
101: SQILPSPKLV PGLQNCGVAL VKPRVNMNFV SAFRLFSSSG FRKVDGNFAR KVVDKPIKAV SSTFARYRMA LGLHVDAFWK KNNLLVFGAG AVFVCIFLWR
201: VMFGIASTFV GLSEGMAKYG FLALSSAIVA FAGLYLRARF TINPDKVYRI TMRKLNTAAD VLEVMGAPLA GSDLRAYVMS GGGITFKKFK PTIRNKRCFL
301: LFPVQGSERK GLVSVEVKKK KGQYDMKLLA VDIPMASGPD QRLFLIGDEE EYRVGGGLIS ELRDPVVKAM AATKEFDNLD RIEEEEDAER ELQEAERKER
401: EEIELQEAER KEREEFELQE AERKQREEIE KLEK

Arabidopsis Description

At3g56430 [Source:UniProtKB/TrEMBL;Acc:Q9LXZ7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.