CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 6
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004587.1-P	Field mustard	mitochondrion, plastid	100.0	100.0
CDY23881	Canola	plastid	98.06	97.79
CDY36983	Canola	mitochondrion	35.73	96.99
CDY03525	Canola	mitochondrion	35.46	96.24
CDY40525	Canola	mitochondrion	35.46	96.24
CDY09265	Canola	cytosol	28.81	92.86
CDX72137	Canola	endoplasmic reticulum	52.91	90.95
CDY27214	Canola	plastid	62.6	84.33
AT2G40800.1	Thale cress	mitochondrion	78.12	74.8
KRH64227	Soybean	mitochondrion	59.28	63.5
KRH53699	Soybean	mitochondrion	59.56	63.42
GSMUA_Achr8P21420_001	Banana	endoplasmic reticulum, golgi	44.04	60.23
Solyc03g095470.2.1	Tomato	plastid	59.28	58.31
PGSC0003DMT400013467	Potato	plastid	59.28	57.84
VIT_13s0067g00210.t01	Wine grape	mitochondrion, plastid	58.45	55.24
Os01t0168300-01	Rice	mitochondrion	54.02	51.32
TraesCS3B01G111500.1	Wheat	mitochondrion, plastid	53.74	50.65
Zm00001d008689_P003	Maize	mitochondrion	52.91	50.53
TraesCS3D01G096200.1	Wheat	mitochondrion	53.74	50.52
EES00240	Sorghum	mitochondrion	53.74	50.39
Zm00001d039709_P001	Maize	mitochondrion	52.91	50.0
TraesCS3A01G095800.1	Wheat	mitochondrion	52.91	49.74
HORVU3Hr1G017300.2	Barley	mitochondrion, plastid	52.91	46.02
GSMUA_Achr10P...	Banana	mitochondrion	38.23	44.95
CDY20610	Canola	plasma membrane	14.96	44.63

Protein Annotations

EnsemblPlants:CDX79970	EnsemblPlantsGene:GSBRNA2T00132832001	GO:A0A078CT05	ncoils:Coil	PANTHER:PTHR36354	ProteinID:CDX79970
ProteinID:CDX79970.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0002547590	MapMan:35.2	:

Description

BnaA05g01860D

Coordinates

chrLK031819:+:1113284..1115417

Molecular Weight (calculated)

40241.9 Da

IEP (calculated)

10.418

GRAVY (calculated)

-0.201

Length

361 amino acids

Sequence
(BLAST)

001: MVKPSDFKAI HGFIRSHYTR VNPVTTHRSN PSSSIASHLH TRLTSFHSLS PKPTGLSQLL SQKLQPLGLP RVKNASFAFA FRFVSTKSSG FRKVDGSFAR
101: KVVDKPVKAV SSSFARYREA MGLHVDAFWK KNSLVLYGAG GVFVCIFLWR IMFGIASTFV GLSEGMAKYG FLALSSAIVA FSGLYLRSRF TINPDKVYRM
201: TMRKINTAAD ILEVMGAPLS GSDLRAYVMS GGGITFKKFK PTIRSKRCFL LFPVQGSERK GLVSVEVKKK KGQYDMKLLA VDIPMASGPD QRLYLIGDEE
301: GYKVGGGLIS ELRDPVVKAM AATKEFDNLD RIEEEEDAER ELQEAERKHR EEIEKLEKES S

Best Arabidopsis Sequence Match ( AT2G40800.1 )
(BLAST)

001: MVKPSDFKAI QGFIRLHYTR VNPVTIGRSN PSALSSPAIP SNGVSQLQPK FSFHSLSSKP TSKNVGLYQI LSSPKLNPKL QQALGLPRVN VSFASAFRLV
101: STKSSGFRKV DGSFARKVVD KPVKAVSSTF ARYREAIGLH IDAFWKKNSL VVFGAAGVFV CIFLWRIMFG IASTFVGLSE GMAKYGFLAL SSAIVAFSGL
201: YLRSRFTINP DKVYRMTMRK INTAAEILEV MGAPLSGSDL RAYVMSGGGI TFKKFKPTIR SKRCFLLFPV QGSEQKGLVS VEVKKKKGQY DMKLLAVDIP
301: MASGPDQRLF LIGDEEEYRI GGGLISVLRD PVVKAMAATK EFDNLDRIEE EEDAERELQE AERKHREEIE KLEKEGS

Arabidopsis Description

Import inner membrane translocase subunit [Source:UniProtKB/TrEMBL;Acc:Q9SHB0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.