CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 1
plastid 2
endoplasmic reticulum 3
extracellular 2
vacuole 2
plasma membrane 2
golgi 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, peroxisome, secretory
BaCelLo:	cytosol
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY36983	Canola	mitochondrion	55.71	87.97
CDY40525	Canola	mitochondrion	55.24	87.22
CDY03525	Canola	mitochondrion	55.24	87.22
CDY09265	Canola	cytosol	44.29	83.04
CDY27214	Canola	plastid	98.57	77.24
GSMUA_Achr8P21420_001	Banana	endoplasmic reticulum, golgi	76.67	60.98
Bra007246.1-P	Field mustard	mitochondrion	99.52	56.64
CDX79970	Canola	mitochondrion, plastid	90.95	52.91
CDY23881	Canola	plastid	90.48	52.49
KRH53699	Soybean	mitochondrion	81.43	50.44
KRH64227	Soybean	mitochondrion	80.0	49.85
PGSC0003DMT400013467	Potato	plastid	82.86	47.03
Solyc03g095470.2.1	Tomato	plastid	81.9	46.87
VIT_13s0067g00210.t01	Wine grape	mitochondrion, plastid	83.81	46.07
AT3G56430.1	Thale cress	mitochondrion	90.95	44.01
Os01t0168300-01	Rice	mitochondrion	78.57	43.42
Zm00001d008689_P003	Maize	mitochondrion	77.62	43.12
Zm00001d039709_P001	Maize	mitochondrion	77.14	42.41
EES00240	Sorghum	mitochondrion	77.62	42.34
TraesCS3B01G111500.1	Wheat	mitochondrion, plastid	77.14	42.3
TraesCS3A01G095800.1	Wheat	mitochondrion	77.14	42.19
TraesCS3D01G096200.1	Wheat	mitochondrion	77.14	42.19
HORVU3Hr1G017300.2	Barley	mitochondrion, plastid	76.67	38.8
GSMUA_Achr10P...	Banana	mitochondrion	48.1	32.9
CDY20610	Canola	plasma membrane	15.71	27.27

Protein Annotations

EnsemblPlants:CDX72137	EnsemblPlantsGene:GSBRNA2T00155956001	GO:A0A078C5G0	ncoils:Coil	PANTHER:PTHR36354	ProteinID:CDX72137
ProteinID:CDX72137.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EED545	MapMan:35.2	:

Description

BnaC08g27370D

Coordinates

chrLK031795:+:2612439..2613506

Molecular Weight (calculated)

23351.4 Da

IEP (calculated)

6.880

GRAVY (calculated)

-0.232

Length

210 amino acids

Sequence
(BLAST)

001: MFGIASTFVG LSEGMAKYGF LALSSAIVAF AGLYLRARFT INPDKVYRIA MRKLNTAANI LEVMGAPLTG SDLRAYVMSG GGITLKKFKP TIRSKRCFLL
101: FPVQGAERKG LVSVEVKKKK GQYDMKLLAV DIPMASGPDQ RLFLIGDEEE YRVGGGLISE LRDPVVKAMA AAKEFDNLDR IEDEEDEERE LLEAERKQRE
201: ETEKLEKDSS

Best Arabidopsis Sequence Match ( AT3G56430.1 )
(BLAST)

001: MVKPSDFKAV HKLIQLHYSR VNLFTTTGWS KLSALSSPAL PSNGVSQLQP KSGFHTFSSR PTSKNFGLSQ ILPSNGVSQL QPKTSFHSFL SRPTSKNVGL
101: SQILPSPKLV PGLQNCGVAL VKPRVNMNFV SAFRLFSSSG FRKVDGNFAR KVVDKPIKAV SSTFARYRMA LGLHVDAFWK KNNLLVFGAG AVFVCIFLWR
201: VMFGIASTFV GLSEGMAKYG FLALSSAIVA FAGLYLRARF TINPDKVYRI TMRKLNTAAD VLEVMGAPLA GSDLRAYVMS GGGITFKKFK PTIRNKRCFL
301: LFPVQGSERK GLVSVEVKKK KGQYDMKLLA VDIPMASGPD QRLFLIGDEE EYRVGGGLIS ELRDPVVKAM AATKEFDNLD RIEEEEDAER ELQEAERKER
401: EEIELQEAER KEREEFELQE AERKQREEIE KLEK

Arabidopsis Description

At3g56430 [Source:UniProtKB/TrEMBL;Acc:Q9LXZ7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.