Factsheet for Solyc03g095470.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	plastid
Plant-mPloc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400013467	Potato	plastid	95.64	94.86
CDX72137	Canola	endoplasmic reticulum	46.87	81.9
CDY36983	Canola	mitochondrion	28.61	78.95
CDY09265	Canola	cytosol	23.98	78.57
CDY03525	Canola	mitochondrion	28.07	77.44
CDY40525	Canola	mitochondrion	28.07	77.44
CDY27214	Canola	plastid	53.95	73.88
GSMUA_Achr8P21420_001	Banana	endoplasmic reticulum, golgi	43.32	60.23
KRH53699	Soybean	mitochondrion	55.31	59.88
KRH64227	Soybean	mitochondrion	54.77	59.64
Bra004587.1-P	Field mustard	mitochondrion, plastid	58.31	59.28
CDX79970	Canola	mitochondrion, plastid	58.31	59.28
CDY23881	Canola	plastid	58.04	58.84
Bra007246.1-P	Field mustard	mitochondrion	57.49	57.18
VIT_13s0067g00210.t01	Wine grape	mitochondrion, plastid	59.4	57.07
AT2G40800.1	Thale cress	mitochondrion	57.22	55.7
Os01t0168300-01	Rice	mitochondrion	55.86	53.95
TraesCS3D01G096200.1	Wheat	mitochondrion	54.77	52.34
Zm00001d008689_P003	Maize	mitochondrion	53.68	52.12
TraesCS3B01G111500.1	Wheat	mitochondrion, plastid	54.22	51.96
EES00240	Sorghum	mitochondrion	54.22	51.69
TraesCS3A01G095800.1	Wheat	mitochondrion	53.13	50.78
Zm00001d039709_P001	Maize	mitochondrion	51.5	49.48
HORVU3Hr1G017300.2	Barley	mitochondrion, plastid	53.68	47.47
AT3G56430.1	Thale cress	mitochondrion	54.77	46.31
GSMUA_Achr10P...	Banana	mitochondrion	37.33	44.63
CDY20610	Canola	plasma membrane	12.81	38.84
Bra016969.1-P	Field mustard	mitochondrion	16.35	30.61

Protein Annotations

EnsemblPlants:Solyc03g095470.2.1	EnsemblPlantsGene:Solyc03g095470.2	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	ncoils:Coil
PANTHER:PTHR36354	SEG:seg	TMHMM:TMhelix	UniParc:UPI0002767849	UniProt:K4BIX1	MapMan:35.2

Description

No Description!

Coordinates

chr3:+:56591507..56594927

Molecular Weight (calculated)

41252.1 Da

IEP (calculated)

10.199

GRAVY (calculated)

-0.274

Length

367 amino acids

Sequence
(BLAST)

001: MSKSSSSKFV LSNFYHYILS KPHQFSTPNV GISHFLSNHS KIIQKPAVNQ WVSNTQRTHF SSSPFPRVLQ NPSKKLDPDG SFLWNRKLLG FRYFSLKSSG
101: LGLGKNVLKN PVEAAKKTTL RYKGAVGLQM EAFWKRNSMV LFGAAGIMVC ILLWRILFGI ATTFIGLSEG MAKYGFLALS SAIVAFAGLY LRSRFTINPD
201: KVYRMAMRRL NTEAGILEVM GAPLSGTDLR AYVMSGGGVT LKNFKPRFRG KRCFLIFPIR GSERKGLVSV EVKNKQGQYD MKLLAVDIPM AAGPDQRLYL
301: IGDEEEYRVG GGLIAELRDP VVKAMAATKE FEERDDLEDE EDAERELQEA ERKHQEEIEK LEKGDSR

Best Arabidopsis Sequence Match ( AT2G40800.1 )
(BLAST)

001: MVKPSDFKAI QGFIRLHYTR VNPVTIGRSN PSALSSPAIP SNGVSQLQPK FSFHSLSSKP TSKNVGLYQI LSSPKLNPKL QQALGLPRVN VSFASAFRLV
101: STKSSGFRKV DGSFARKVVD KPVKAVSSTF ARYREAIGLH IDAFWKKNSL VVFGAAGVFV CIFLWRIMFG IASTFVGLSE GMAKYGFLAL SSAIVAFSGL
201: YLRSRFTINP DKVYRMTMRK INTAAEILEV MGAPLSGSDL RAYVMSGGGI TFKKFKPTIR SKRCFLLFPV QGSEQKGLVS VEVKKKKGQY DMKLLAVDIP
301: MASGPDQRLF LIGDEEEYRI GGGLISVLRD PVVKAMAATK EFDNLDRIEE EEDAERELQE AERKHREEIE KLEKEGS

Arabidopsis Description

Import inner membrane translocase subunit [Source:UniProtKB/TrEMBL;Acc:Q9SHB0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.