CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 6

Predictors

GFP

MS/MS

Papers

mitochondrion: 27780359
mitochondrion: 28499913

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH64227	Soybean	mitochondrion	91.74	92.28
CDX72137	Canola	endoplasmic reticulum	50.44	81.43
CDY36983	Canola	mitochondrion	31.56	80.45
CDY09265	Canola	cytosol	26.55	80.36
CDY40525	Canola	mitochondrion	31.27	79.7
CDY03525	Canola	mitochondrion	31.27	79.7
CDY27214	Canola	plastid	56.64	71.64
Bra004587.1-P	Field mustard	mitochondrion, plastid	63.42	59.56
CDX79970	Canola	mitochondrion, plastid	63.42	59.56
GSMUA_Achr8P21420_001	Banana	endoplasmic reticulum, golgi	46.31	59.47
CDY23881	Canola	plastid	62.83	58.84
VIT_13s0067g00210.t01	Wine grape	mitochondrion, plastid	65.19	57.85
AT2G40800.1	Thale cress	mitochondrion	64.31	57.82
Bra007246.1-P	Field mustard	mitochondrion	62.83	57.72
PGSC0003DMT400013467	Potato	plastid	60.47	55.41
Solyc03g095470.2.1	Tomato	plastid	59.88	55.31
Zm00001d008689_P003	Maize	mitochondrion	57.82	51.85
Os01t0168300-01	Rice	mitochondrion	57.82	51.58
Zm00001d039709_P001	Maize	mitochondrion	57.52	51.05
EES00240	Sorghum	mitochondrion	57.52	50.65
TraesCS3B01G111500.1	Wheat	mitochondrion, plastid	56.34	49.87
TraesCS3A01G095800.1	Wheat	mitochondrion	56.05	49.48
TraesCS3D01G096200.1	Wheat	mitochondrion	56.05	49.48
AT3G56430.1	Thale cress	mitochondrion	62.24	48.62
HORVU3Hr1G017300.2	Barley	mitochondrion, plastid	56.64	46.27
GSMUA_Achr10P...	Banana	mitochondrion	41.59	45.93
CDY20610	Canola	plasma membrane	14.45	40.5
Bra016969.1-P	Field mustard	mitochondrion	18.29	31.63

Protein Annotations

EMBL:ACUP02003480	EnsemblPlants:KRH53699	EnsemblPlantsGene:GLYMA_06G141000	EntrezGene:100819345	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	ncoils:Coil	PANTHER:PTHR36354	ProteinID:KRH53699	ProteinID:KRH53699.1	SEG:seg
TMHMM:TMhelix	UniParc:UPI0002339FD3	UniProt:I1KB56	MapMan:35.2	:	:

Description

hypothetical protein

Coordinates

chr6:+:11486389..11491671

Molecular Weight (calculated)

37743.6 Da

IEP (calculated)

10.168

GRAVY (calculated)

-0.218

Length

339 amino acids

Sequence
(BLAST)

001: MQMSRFTQFR ALLRGTTSHQ RSPLRHPAVA DSSFASKPSV SNASAFRPSS PVFHPQQRLG NSTFRFFSSN FDKGFAQKVF DKPAAAVTSA FSRYREAIGL
101: QIEAFFKRNT LFLWGAGGVV LCAVLWRILF GIANLFVGLS EGMAKYGFLA LSSAIVAFTG LYIRTRLTIN PDKVYRMAMT KLNTSAGILE VMGAPLSGTD
201: LRAYIMSGGG LTVKKFKPSV RSRRCFLIFP IRGSEKKGLV SVEVKKKKGQ YDMKLLAVDV PMASGPDQRL FLIGDEEEYR VGGGLISDLR DPVVRAMAAT
301: KEFDDLDEIE EEEDAERERQ ETERKEREEI EKLEKSSGT

Best Arabidopsis Sequence Match ( AT2G40800.1 )
(BLAST)

001: MVKPSDFKAI QGFIRLHYTR VNPVTIGRSN PSALSSPAIP SNGVSQLQPK FSFHSLSSKP TSKNVGLYQI LSSPKLNPKL QQALGLPRVN VSFASAFRLV
101: STKSSGFRKV DGSFARKVVD KPVKAVSSTF ARYREAIGLH IDAFWKKNSL VVFGAAGVFV CIFLWRIMFG IASTFVGLSE GMAKYGFLAL SSAIVAFSGL
201: YLRSRFTINP DKVYRMTMRK INTAAEILEV MGAPLSGSDL RAYVMSGGGI TFKKFKPTIR SKRCFLLFPV QGSEQKGLVS VEVKKKKGQY DMKLLAVDIP
301: MASGPDQRLF LIGDEEEYRI GGGLISVLRD PVVKAMAATK EFDNLDRIEE EEDAERELQE AERKHREEIE KLEKEGS

Arabidopsis Description

Import inner membrane translocase subunit [Source:UniProtKB/TrEMBL;Acc:Q9SHB0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.