CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004587.1-P	Field mustard	mitochondrion, plastid	97.79	98.06
CDX79970	Canola	mitochondrion, plastid	97.79	98.06
CDY36983	Canola	mitochondrion	35.36	96.24
CDY03525	Canola	mitochondrion	35.08	95.49
CDY40525	Canola	mitochondrion	35.08	95.49
CDY09265	Canola	cytosol	28.45	91.96
CDX72137	Canola	endoplasmic reticulum	52.49	90.48
CDY27214	Canola	plastid	62.15	83.96
AT2G40800.1	Thale cress	mitochondrion	76.8	73.74
KRH64227	Soybean	mitochondrion	58.84	63.2
KRH53699	Soybean	mitochondrion	58.84	62.83
GSMUA_Achr8P21420_001	Banana	endoplasmic reticulum, golgi	43.92	60.23
Solyc03g095470.2.1	Tomato	plastid	58.84	58.04
PGSC0003DMT400013467	Potato	plastid	58.84	57.57
VIT_13s0067g00210.t01	Wine grape	mitochondrion, plastid	58.01	54.97
Os01t0168300-01	Rice	mitochondrion	53.87	51.32
TraesCS3B01G111500.1	Wheat	mitochondrion, plastid	53.59	50.65
EES00240	Sorghum	mitochondrion	53.87	50.65
TraesCS3D01G096200.1	Wheat	mitochondrion	53.59	50.52
Zm00001d008689_P003	Maize	mitochondrion	52.49	50.26
TraesCS3A01G095800.1	Wheat	mitochondrion	52.49	49.48
Zm00001d039709_P001	Maize	mitochondrion	52.21	49.48
HORVU3Hr1G017300.2	Barley	mitochondrion, plastid	52.76	46.02
GSMUA_Achr10P...	Banana	mitochondrion	38.12	44.95
CDY20610	Canola	plasma membrane	14.92	44.63

Protein Annotations

EnsemblPlants:CDY23881	EnsemblPlantsGene:GSBRNA2T00024315001	GO:A0A078GER5	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
ncoils:Coil	PANTHER:PTHR36354	ProteinID:CDY23881	ProteinID:CDY23881.1	SEG:seg	TMHMM:TMhelix
UniParc:UPI0004EDB872	UniProt:A0A078GER5	MapMan:35.2	:	:	:

Description

BnaC04g01560DBnaC04g01560D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GER5]

Coordinates

chrLK032150:+:475225..477343

Molecular Weight (calculated)

40196.9 Da

IEP (calculated)

10.466

GRAVY (calculated)

-0.187

Length

362 amino acids

Sequence
(BLAST)

001: MVKPSDFKAI HGFIRSHYTR VNPVTTHRSN PSSGGVASHL HTRLTSFHSL SPKPTGLSQL LSQKLQPLGL PRVKNASFAF AFRFVSTKSS GFRKVDGSFA
101: RKVVDKPVKA VSSSFARYRE AMGLHVDAFW KKNSLVLYGA GGVFVCIFLW RIMFGIASTF VGLSEGMAKY GFLALSSAIV AFSGLYLRSR FTINPDKVYR
201: MTMRKINTAA DILEVMGAPL SGSDLRAYVM SGGGITFKKF KPTIRSKRCF LLFPVQGSER KGLVSVEVKK KKGQYDMKLL AVDIPMASGP DQRLYLIGDE
301: EGYKVGGGLI SELRDPVVKA MAATKEFDNL DRIEEEEDAA RELQEAERKH REEIEKLEKE SS

Best Arabidopsis Sequence Match ( AT2G40800.1 )
(BLAST)

001: MVKPSDFKAI QGFIRLHYTR VNPVTIGRSN PSALSSPAIP SNGVSQLQPK FSFHSLSSKP TSKNVGLYQI LSSPKLNPKL QQALGLPRVN VSFASAFRLV
101: STKSSGFRKV DGSFARKVVD KPVKAVSSTF ARYREAIGLH IDAFWKKNSL VVFGAAGVFV CIFLWRIMFG IASTFVGLSE GMAKYGFLAL SSAIVAFSGL
201: YLRSRFTINP DKVYRMTMRK INTAAEILEV MGAPLSGSDL RAYVMSGGGI TFKKFKPTIR SKRCFLLFPV QGSEQKGLVS VEVKKKKGQY DMKLLAVDIP
301: MASGPDQRLF LIGDEEEYRI GGGLISVLRD PVVKAMAATK EFDNLDRIEE EEDAERELQE AERKHREEIE KLEKEGS

Arabidopsis Description

Import inner membrane translocase subunit [Source:UniProtKB/TrEMBL;Acc:Q9SHB0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.