CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
mitochondrion 1
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	extracellular, plasma membrane, plastid
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	extracellular
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27214	Canola	plastid	42.98	19.4
GSMUA_Achr10P...	Banana	mitochondrion	42.15	16.61
CDX72137	Canola	endoplasmic reticulum	27.27	15.71
Bra007246.1-P	Field mustard	mitochondrion	46.28	15.18
GSMUA_Achr8P21420_001	Banana	endoplasmic reticulum, golgi	33.06	15.15
Os01t0168300-01	Rice	mitochondrion	47.11	15.0
CDX79970	Canola	mitochondrion, plastid	44.63	14.96
CDY23881	Canola	plastid	44.63	14.92
Zm00001d008689_P003	Maize	mitochondrion	46.28	14.81
EES00240	Sorghum	mitochondrion	46.28	14.55
KRH64227	Soybean	mitochondrion	40.5	14.54
KRH53699	Soybean	mitochondrion	40.5	14.45
Zm00001d039709_P001	Maize	mitochondrion	45.45	14.4
TraesCS3B01G111500.1	Wheat	mitochondrion, plastid	44.63	14.1
TraesCS3A01G095800.1	Wheat	mitochondrion	44.63	14.06
TraesCS3D01G096200.1	Wheat	mitochondrion	44.63	14.06
VIT_13s0067g00210.t01	Wine grape	mitochondrion, plastid	40.5	12.83
Solyc03g095470.2.1	Tomato	plastid	38.84	12.81
HORVU3Hr1G017300.2	Barley	mitochondrion, plastid	43.8	12.77
PGSC0003DMT400013467	Potato	plastid	38.84	12.7
AT3G56430.1	Thale cress	mitochondrion	45.45	12.67
CDY09265	Canola	cytosol	2.48	2.68
CDY40525	Canola	mitochondrion	2.48	2.26
CDY36983	Canola	mitochondrion	2.48	2.26
CDY03525	Canola	mitochondrion	2.48	2.26

Protein Annotations

EnsemblPlants:CDY20610	EnsemblPlantsGene:GSBRNA2T00012783001	GO:A0A078G262	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0016020	GO:GO:0016021	InterPro:IPR003388
InterPro:Reticulon	PANTHER:PTHR36354	PFAM:PF02453	PFscan:PS50845	ProteinID:CDY20610	ProteinID:CDY20610.1
TMHMM:TMhelix	UniParc:UPI0004EEBFF1	UniProt:A0A078G262	MapMan:35.1	:	:

Description

BnaC08g14480DReticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A078G262]

Coordinates

chrLK032110:+:233469..234410

Molecular Weight (calculated)

12986.5 Da

IEP (calculated)

8.323

GRAVY (calculated)

1.104

Length

121 amino acids

Sequence
(BLAST)

001: MCCCGGTRRS WCVGVTVGTE VNRGLMFLQD LACRGSLKQF LMAAIGLWLA AMIGSCCNFL TVLYIGFVGA GGVFVCIFLW RIMFGIASTF VGLSEGMAKY
101: GFLVLSSAIV AFACMDVKLS Y

Best Arabidopsis Sequence Match ( AT3G10260.1 )
(BLAST)

001: MPDKNIVEDV IGDLVDNFTE TVQKNKHGSS FFEQEDSVSS RFNRLFDRQK PIHHVLGGGK SADVLLWRNK KISASVLMGA TAIWVLFEWI NFHFLSLVCY
101: ALLLGMIAQF VWSNASGFLN RSQSRVPRLV LPKDFFAEVG VAVGKEVNRG LLFLQDLACK GNLKQFLMAV IGLWVAAMVG SCCNFLTVLY IGFVGAHTMP
201: VLYERYEDEV DGFMDSMIMK FHSHYKKLDT GFLSRIPSGK FGLKKRE

Arabidopsis Description

Reticulon family protein [Source:TAIR;Acc:AT3G10260]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.