CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY03525	Canola	mitochondrion	93.23	93.23
CDY36983	Canola	mitochondrion	93.23	93.23
CDY09265	Canola	cytosol	78.2	92.86
CDX72137	Canola	endoplasmic reticulum	87.22	55.24
CDY27214	Canola	plastid	87.97	43.66
CDX79970	Canola	mitochondrion, plastid	96.24	35.46
CDY23881	Canola	plastid	95.49	35.08
AT2G40800.1	Thale cress	mitochondrion	90.98	32.1
GSMUA_Achr8P21420_001	Banana	endoplasmic reticulum, golgi	63.16	31.82
KRH53699	Soybean	mitochondrion	79.7	31.27
KRH64227	Soybean	mitochondrion	78.2	30.86
VIT_13s0067g00210.t01	Wine grape	mitochondrion, plastid	81.95	28.53
Solyc03g095470.2.1	Tomato	plastid	77.44	28.07
PGSC0003DMT400013467	Potato	plastid	77.44	27.84
Os01t0168300-01	Rice	mitochondrion	69.17	24.21
Zm00001d008689_P003	Maize	mitochondrion	67.67	23.81
EES00240	Sorghum	mitochondrion	68.42	23.64
Zm00001d039709_P001	Maize	mitochondrion	67.67	23.56
TraesCS3B01G111500.1	Wheat	mitochondrion, plastid	66.92	23.24
TraesCS3A01G095800.1	Wheat	mitochondrion	66.92	23.18
TraesCS3D01G096200.1	Wheat	mitochondrion	66.92	23.18
HORVU3Hr1G017300.2	Barley	mitochondrion, plastid	66.92	21.45
GSMUA_Achr10P...	Banana	mitochondrion	21.05	9.12
CDY20610	Canola	plasma membrane	2.26	2.48

Protein Annotations

EnsemblPlants:CDY40525	EnsemblPlantsGene:GSBRNA2T00069831001	ncoils:Coil	PANTHER:PTHR36354	ProteinID:CDY40525	ProteinID:CDY40525.1
SEG:seg	UniParc:UPI0004EE5ED1	UniProt:A0A078HPS5	MapMan:35.2	:	:

Description

BnaC01g19870DBnaC01g19870D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HPS5]

Coordinates

chrLK032473:-:177588..178122

Molecular Weight (calculated)

15070.1 Da

IEP (calculated)

5.139

GRAVY (calculated)

-0.679

Length

133 amino acids

Sequence
(BLAST)

001: MSGGGITFKK FNPTIRSKHC FLLLPVQCSE RKGLVSVEVK KKKGQYDMKL LAVDIPMASG PDQRLYLIGD EEGYKVGGGL ISELRDPVVK AMAATKEFDN
101: LERIEEEEDA ERELQEAERK HREEIEKLEK ESS

Best Arabidopsis Sequence Match ( AT3G56430.1 )
(BLAST)

001: MVKPSDFKAV HKLIQLHYSR VNLFTTTGWS KLSALSSPAL PSNGVSQLQP KSGFHTFSSR PTSKNFGLSQ ILPSNGVSQL QPKTSFHSFL SRPTSKNVGL
101: SQILPSPKLV PGLQNCGVAL VKPRVNMNFV SAFRLFSSSG FRKVDGNFAR KVVDKPIKAV SSTFARYRMA LGLHVDAFWK KNNLLVFGAG AVFVCIFLWR
201: VMFGIASTFV GLSEGMAKYG FLALSSAIVA FAGLYLRARF TINPDKVYRI TMRKLNTAAD VLEVMGAPLA GSDLRAYVMS GGGITFKKFK PTIRNKRCFL
301: LFPVQGSERK GLVSVEVKKK KGQYDMKLLA VDIPMASGPD QRLFLIGDEE EYRVGGGLIS ELRDPVVKAM AATKEFDNLD RIEEEEDAER ELQEAERKER
401: EEIELQEAER KEREEFELQE AERKQREEIE KLEK

Arabidopsis Description

At3g56430 [Source:UniProtKB/TrEMBL;Acc:Q9LXZ7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.