Factsheet for TraesCS3D01G096200.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G111500.1	Wheat	mitochondrion, plastid	95.57	95.82
TraesCS3A01G095800.1	Wheat	mitochondrion	88.8	88.8
HORVU3Hr1G017300.2	Barley	mitochondrion, plastid	91.15	84.34
Os01t0168300-01	Rice	mitochondrion	81.77	82.63
EES00240	Sorghum	mitochondrion	79.95	79.74
Zm00001d039709_P001	Maize	mitochondrion	77.6	78.01
Zm00001d008689_P003	Maize	mitochondrion	76.3	77.51
CDX72137	Canola	endoplasmic reticulum	42.19	77.14
CDY27214	Canola	plastid	48.7	69.78
CDY09265	Canola	cytosol	20.31	69.64
CDY03525	Canola	mitochondrion	23.44	67.67
CDY36983	Canola	mitochondrion	23.44	67.67
CDY40525	Canola	mitochondrion	23.18	66.92
GSMUA_Achr8P21420_001	Banana	endoplasmic reticulum, golgi	44.53	64.77
KRH64227	Soybean	mitochondrion	49.22	56.08
KRH53699	Soybean	mitochondrion	49.48	56.05
Solyc03g095470.2.1	Tomato	plastid	52.34	54.77
PGSC0003DMT400013467	Potato	plastid	52.6	54.59
Bra007246.1-P	Field mustard	mitochondrion	52.08	54.2
CDX79970	Canola	mitochondrion, plastid	50.52	53.74
Bra004587.1-P	Field mustard	mitochondrion, plastid	50.52	53.74
CDY23881	Canola	plastid	50.52	53.59
VIT_13s0067g00210.t01	Wine grape	mitochondrion, plastid	52.86	53.14
GSMUA_Achr10P...	Banana	mitochondrion	40.1	50.16
AT2G40800.1	Thale cress	mitochondrion	48.96	49.87
AT3G56430.1	Thale cress	mitochondrion	52.34	46.31
CDY20610	Canola	plasma membrane	14.06	44.63
Bra016969.1-P	Field mustard	mitochondrion	15.62	30.61

Protein Annotations

EnsemblPlants:TraesCS3D01G096200.1	EnsemblPlantsGene:TraesCS3D01G096200	ncoils:Coil	PANTHER:PTHR36354	SEG:seg	TMHMM:TMhelix
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chr3D:+:48804501..48807949

Molecular Weight (calculated)

42068.0 Da

IEP (calculated)

10.430

GRAVY (calculated)

-0.305

Length

384 amino acids

Sequence
(BLAST)

001: MAAAALSSSR RALHTVHRHL LLRPSPFPSP RAPPTPVPRH FPAPPAPSFS RFFTTARPET RPPRHGLPAL PQQHKAVQRL VGGVRSFASG GGGGGAKLAP
101: LGQGVRGLGR PVEAAKNAAA RYREAVGLQV EAFWRRNYLL LVGAGGVIVC IALWRVMFGI ASTFVGLSEG MAKYGFLALA TAMVAFAGMY ARARFTINPD
201: KVYRIAMTKL NTSAAILEVM GAPLAGTDVR AYVMSGGGPK LKDFKFRVGG KRCFLIFPIK GSERKGLVSV EVKKKKGQYD MKLLAVDIPM ATGPDQRLFL
301: VGDEQEYKVG GGLISELRDP IVKAMAAEKE FDYLDEREDA EDERREREEA EEEAAEALRR EEDRLREEAK ERQRREAENL EKGS

Best Arabidopsis Sequence Match ( AT3G56430.1 )
(BLAST)

001: MVKPSDFKAV HKLIQLHYSR VNLFTTTGWS KLSALSSPAL PSNGVSQLQP KSGFHTFSSR PTSKNFGLSQ ILPSNGVSQL QPKTSFHSFL SRPTSKNVGL
101: SQILPSPKLV PGLQNCGVAL VKPRVNMNFV SAFRLFSSSG FRKVDGNFAR KVVDKPIKAV SSTFARYRMA LGLHVDAFWK KNNLLVFGAG AVFVCIFLWR
201: VMFGIASTFV GLSEGMAKYG FLALSSAIVA FAGLYLRARF TINPDKVYRI TMRKLNTAAD VLEVMGAPLA GSDLRAYVMS GGGITFKKFK PTIRNKRCFL
301: LFPVQGSERK GLVSVEVKKK KGQYDMKLLA VDIPMASGPD QRLFLIGDEE EYRVGGGLIS ELRDPVVKAM AATKEFDNLD RIEEEEDAER ELQEAERKER
401: EEIELQEAER KEREEFELQE AERKQREEIE KLEK

Arabidopsis Description

At3g56430 [Source:UniProtKB/TrEMBL;Acc:Q9LXZ7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.