Factsheet for Zm00001d039709_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d008689_P003	Maize	mitochondrion	89.01	89.95
EES00240	Sorghum	mitochondrion	89.79	89.09
Os01t0168300-01	Rice	mitochondrion	79.32	79.74
TraesCS3B01G111500.1	Wheat	mitochondrion, plastid	78.27	78.07
TraesCS3D01G096200.1	Wheat	mitochondrion	78.01	77.6
CDX72137	Canola	endoplasmic reticulum	42.41	77.14
TraesCS3A01G095800.1	Wheat	mitochondrion	75.92	75.52
HORVU3Hr1G017300.2	Barley	mitochondrion, plastid	78.01	71.81
CDY09265	Canola	cytosol	20.42	69.64
CDY27214	Canola	plastid	48.17	68.66
CDY03525	Canola	mitochondrion	23.82	68.42
CDY36983	Canola	mitochondrion	23.82	68.42
CDY40525	Canola	mitochondrion	23.56	67.67
GSMUA_Achr8P21420_001	Banana	endoplasmic reticulum, golgi	46.6	67.42
KRH53699	Soybean	mitochondrion	51.05	57.52
KRH64227	Soybean	mitochondrion	50.0	56.68
VIT_13s0067g00210.t01	Wine grape	mitochondrion, plastid	53.66	53.66
Bra007246.1-P	Field mustard	mitochondrion	51.83	53.66
CDX79970	Canola	mitochondrion, plastid	50.0	52.91
Bra004587.1-P	Field mustard	mitochondrion, plastid	50.0	52.91
GSMUA_Achr10P...	Banana	mitochondrion	42.15	52.44
CDY23881	Canola	plastid	49.48	52.21
PGSC0003DMT400013467	Potato	plastid	50.26	51.89
Solyc03g095470.2.1	Tomato	plastid	49.48	51.5
AT2G40800.1	Thale cress	mitochondrion	48.69	49.34
CDY20610	Canola	plasma membrane	14.4	45.45
AT3G56430.1	Thale cress	mitochondrion	51.31	45.16
Bra016969.1-P	Field mustard	mitochondrion	15.18	29.59

Protein Annotations

EnsemblPlants:Zm00001d039709_P001	EnsemblPlants:Zm00001d039709_T001	EnsemblPlantsGene:Zm00001d039709	EntrezGene:103649707	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	ncoils:Coil	PANTHER:PTHR36354	ProteinID:ONM29782.1	SEG:seg	TMHMM:TMhelix
UniParc:UPI000221DAD5	UniProt:A0A1D6MKP3	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr3:+:12747718..12750928

Molecular Weight (calculated)

42013.8 Da

IEP (calculated)

10.468

GRAVY (calculated)

-0.272

Length

382 amino acids

Sequence
(BLAST)

001: MAVAFASSRR ALHTLHRRLL LHPSPTPAAA RRALPTSTRT PIPAHSPTFI SSSSSSSSSR FFTTARTDAT RLRHGVLPQR LAGGVRSVAS GGSKLAPLGQ
101: GVKGLGRPME AARSAAARYR AAVGLQVEAF WRRNYMILVG AGAVVVCVAL WRIMFGIAST FVGLSEGMAK YGFLALATAL VAFAGMYARA RLTINPDKVY
201: RLAMTKLNTS AAILEVMGAP LTGTDVRAYV MSGGGPKLKD FKFKLGSKRC FLIFPIKGSE RRGLVSVEFK KKKGQYDMKL LAVDIPMASG PDQRLFVVGD
301: EQEYKVGGGL ISELRDPIVK AMAAEKEFDY LDEREDEEDE RREREEAEQE EAEALRREEE RLRQQAEERR RREEAESLEK AS

Best Arabidopsis Sequence Match ( AT3G56430.1 )
(BLAST)

001: MVKPSDFKAV HKLIQLHYSR VNLFTTTGWS KLSALSSPAL PSNGVSQLQP KSGFHTFSSR PTSKNFGLSQ ILPSNGVSQL QPKTSFHSFL SRPTSKNVGL
101: SQILPSPKLV PGLQNCGVAL VKPRVNMNFV SAFRLFSSSG FRKVDGNFAR KVVDKPIKAV SSTFARYRMA LGLHVDAFWK KNNLLVFGAG AVFVCIFLWR
201: VMFGIASTFV GLSEGMAKYG FLALSSAIVA FAGLYLRARF TINPDKVYRI TMRKLNTAAD VLEVMGAPLA GSDLRAYVMS GGGITFKKFK PTIRNKRCFL
301: LFPVQGSERK GLVSVEVKKK KGQYDMKLLA VDIPMASGPD QRLFLIGDEE EYRVGGGLIS ELRDPVVKAM AATKEFDNLD RIEEEEDAER ELQEAERKER
401: EEIELQEAER KEREEFELQE AERKQREEIE KLEK

Arabidopsis Description

At3g56430 [Source:UniProtKB/TrEMBL;Acc:Q9LXZ7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.