Factsheet for Bra010902.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra027470.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G28120.1	Bra027470.1-P	AT5G42990.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90125	Canola	cytosol	87.7	92.98
CDY11749	Canola	cytosol	85.49	90.33
AT1G28120.1	Thale cress	cytosol	74.76	77.45
PGSC0003DMT400017149	Potato	cytosol	25.24	67.23
GSMUA_Achr5P21640_001	Banana	cytosol	21.45	66.67
Bra030073.1-P	Field mustard	extracellular	41.96	66.5
Os08t0537800-01	Rice	cytosol	45.11	66.2
KRH10721	Soybean	nucleus	59.94	63.12
KRH21599	Soybean	cytosol	59.31	62.46
Solyc04g045480.2.1	Tomato	cytosol	56.15	59.14
GSMUA_Achr5P21620_001	Banana	cytosol	32.49	57.22
VIT_01s0150g00100.t01	Wine grape	cytosol	54.57	56.72
Zm00001d049873_P001	Maize	cytosol, extracellular	54.89	54.72
TraesCS7A01G263900.1	Wheat	cytosol	54.57	54.23
TraesCS7B01G161900.2	Wheat	cytosol	54.57	54.23
EES15282	Sorghum	cytosol	55.2	54.01
HORVU7Hr1G055280.2	Barley	cytosol	54.26	53.92
TraesCS7D01G264800.1	Wheat	cytosol	54.26	53.92
PGSC0003DMT400017147	Potato	cytosol	27.13	50.29
GSMUA_AchrUn_...	Banana	cytosol	39.43	49.8
Zm00001d031668_P001	Maize	cytosol	15.14	42.48
GSMUA_Achr11P...	Banana	cytosol	40.69	39.81

Protein Annotations

Gene3D:1.20.1300.20	MapMan:19.2.3.1.2.1	MapMan:19.2.4.3.3	Gene3D:3.30.200.60	EnsemblPlantsGene:Bra010902	EnsemblPlants:Bra010902.1
EnsemblPlants:Bra010902.1-P	MEROPS:C65.001	GO:GO:0003674	GO:GO:0003824	GO:GO:0004843	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464
GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0008234	GO:GO:0009987
GO:GO:0016579	GO:GO:0016787	GO:GO:0019538	GO:GO:0019784	GO:GO:0036459	GO:GO:0043130
GO:GO:0071108	InterPro:IPR003323	UniProt:M4D349	InterPro:OTU_dom	InterPro:Otubain	PFAM:PF10275
PIRSF:PIRSF013503	PFscan:PS50802	PANTHER:PTHR12931	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C65_otubain	SUPFAM:SSF54001
UniParc:UPI0002545879	:	:	:	:	:

Description

AT1G28120 (E=6e-075) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin thioesterase Otubain (InterPro:IPR016615), Ovarian tumour, otubain (InterPro:IPR003323); Has 295 Blast hits to 295 proteins in 98 species: Archae - 0; Bacteria - 0; Metazoa - 150; Fungi - 50; Plants - 47; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).

Coordinates

chrA08:+:17018844..17020409

Molecular Weight (calculated)

35597.6 Da

IEP (calculated)

4.299

GRAVY (calculated)

-0.266

Length

317 amino acids

Sequence
(BLAST)

001: MQNQNDTVKD DAELAASMSA EQWGCCSVEE PSFQDDEAAK VPYVGDKEPM SSLSAEYQAG SPILLEKIKV LDSQYVAIRR TRGDGNCFFR SFMFSYLEHV
101: LESQDGAEVD RIKVNVEKCR KNLQSLGYTD FTFEDFFALF LEQLDDILQG GEESIRSRDQ SVSDYSKLLL NFFDNSYSKE CGFDKFLCLS VVMFFRFVTA
201: GEIKTRAEFF EPFITGLSNT TVDQFCKTSV EPMGEESDHI HITALSDALG VAIRVVYLDR SSCDTGGGVT VNHHDFVPVG TTNEKEEASA AAPFITLLYR
301: PGHYDILYPK VLDNVEK

Best Arabidopsis Sequence Match ( AT1G28120.1 )
(BLAST)

001: MQNQIDMVKD EAEVAASISA IKGEEWGNCS SVEDQPSFQE EEAAKVPYVG DKEPLSSLAA EYQSGSPILL EKIKILDSQY IGIRRTRGDG NCFFRSFMFS
101: YLEHILESQD RAEVDRIKVN VEKCRKTLQN LGYTDFTFED FFALFLEQLD DILQGTEESI SYDELVNRSR DQSVSDYIVM FFRFVTAGDI RTRADFFEPF
201: ITGLSNATVD QFCKSSVEPM GEESDHIHIT ALSDALGVAI RVVYLDRSSC DSGGVTVNHH DFVPVGITNE KDEEASAPFI TLLYRPGHYD ILYPKPSCKV
301: SDNVGK

Arabidopsis Description

Ubiquitin thioesterase [Source:UniProtKB/TrEMBL;Acc:K9M9G0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.