Factsheet for GSMUA_Achr11P15480_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P21640_001	Banana	cytosol	20.37	64.71
Os08t0537800-01	Rice	cytosol	34.26	51.39
PGSC0003DMT400017149	Potato	cytosol	18.83	51.26
GSMUA_AchrUn_...	Banana	cytosol	38.58	49.8
GSMUA_Achr5P21620_001	Banana	cytosol	26.54	47.78
Zm00001d049873_P001	Maize	cytosol, extracellular	45.37	46.23
CDX90125	Canola	cytosol	42.59	46.15
CDY11749	Canola	cytosol	42.59	46.0
EES15282	Sorghum	cytosol	45.37	45.37
CDY66647	Canola	cytosol	39.2	45.2
KRH21599	Soybean	cytosol	41.98	45.18
Zm00001d031668_P001	Maize	cytosol	15.74	45.13
AT1G28120.1	Thale cress	cytosol	42.59	45.1
KRH10721	Soybean	nucleus	41.67	44.85
HORVU7Hr1G055280.2	Barley	cytosol	44.14	44.83
TraesCS7B01G161900.2	Wheat	cytosol	44.14	44.83
TraesCS7D01G264800.1	Wheat	cytosol	44.14	44.83
TraesCS7A01G263900.1	Wheat	cytosol	43.83	44.51
Solyc04g045480.2.1	Tomato	cytosol	40.74	43.85
VIT_01s0150g00100.t01	Wine grape	cytosol	41.05	43.61
CDY15693	Canola	cytosol	26.23	42.5
Bra030073.1-P	Field mustard	extracellular	26.23	42.5
Bra010902.1-P	Field mustard	cytosol	39.81	40.69
PGSC0003DMT400017147	Potato	cytosol	19.14	36.26

Protein Annotations

EnsemblPlants:GSMUA_Achr11P15480_001	EnsemblPlants:GSMUA_Achr11T15480_001	EnsemblPlantsGene:GSMUA_Achr11G15480_001	Gene3D:1.20.1300.20	Gene3D:3.30.200.60	InterPro:IPR003323
InterPro:OTU_dom	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C65_otubain	PANTHER:PTHR12931	PFAM:PF10275	PFscan:PS50802
SEG:seg	SUPFAM:SSF54001	UniParc:UPI000295C631	UniProt:M0RSH8	MapMan:19.2.3.1.2.1	:

Description

Ubiquitin thioesterase otubain-like [Source:GMGC_GENE;Acc:GSMUA_Achr11G15480_001]

Coordinates

chr11:+:17145906..17151321

Molecular Weight (calculated)

35699.1 Da

IEP (calculated)

4.483

GRAVY (calculated)

-0.205

Length

324 amino acids

Sequence
(BLAST)

001: MAQEAEAITN KRKAGNDFVG DGSGDGDGAE GDLPAMPEVP SLGVDPKSSA EAPGSYPDLV DVYIASLSDG RYGDSKHRFG YKHFFGICDD VAIKNPCVGD
101: KEPLSFLAAE IRSGDHILQE KIKLLNNKYA ALRRIRGDGN CFYRCFMFSY LEQIVATQDK AEVDRILANV AMCRKTLQVL GDPDFMVDEF FFELLQISRD
201: ESFSDNLVLF FRIVASGEIR RRAAFFEPFI IGLENTSVDQ FCKESVEMLG EESNHVQIVA LSDALGVPIS VEYLDQNSSD GGALTPSDVV TNGSNPSRTY
301: LSSTPRVKLL CHLGHYDVLY PNCQ

Best Arabidopsis Sequence Match ( AT1G28120.1 )
(BLAST)

001: MQNQIDMVKD EAEVAASISA IKGEEWGNCS SVEDQPSFQE EEAAKVPYVG DKEPLSSLAA EYQSGSPILL EKIKILDSQY IGIRRTRGDG NCFFRSFMFS
101: YLEHILESQD RAEVDRIKVN VEKCRKTLQN LGYTDFTFED FFALFLEQLD DILQGTEESI SYDELVNRSR DQSVSDYIVM FFRFVTAGDI RTRADFFEPF
201: ITGLSNATVD QFCKSSVEPM GEESDHIHIT ALSDALGVAI RVVYLDRSSC DSGGVTVNHH DFVPVGITNE KDEEASAPFI TLLYRPGHYD ILYPKPSCKV
301: SDNVGK

Arabidopsis Description

Ubiquitin thioesterase [Source:UniProtKB/TrEMBL;Acc:K9M9G0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.