Factsheet for PGSC0003DMT400017147

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P21640_001	Banana	cytosol	38.6	64.71
Solyc04g045480.2.1	Tomato	cytosol	75.44	42.86
Zm00001d031668_P001	Maize	cytosol	21.64	32.74
KRH10721	Soybean	nucleus	54.39	30.9
KRH21599	Soybean	cytosol	53.8	30.56
CDX90125	Canola	cytosol	50.29	28.76
VIT_01s0150g00100.t01	Wine grape	cytosol	50.88	28.52
CDY11749	Canola	cytosol	49.71	28.33
AT1G28120.1	Thale cress	cytosol	50.29	28.1
Bra010902.1-P	Field mustard	cytosol	50.29	27.13
CDY66647	Canola	cytosol	40.94	24.91
Zm00001d049873_P001	Maize	cytosol, extracellular	44.44	23.9
Os08t0537800-01	Rice	cytosol	29.82	23.61
HORVU7Hr1G055280.2	Barley	cytosol	43.86	23.51
TraesCS7A01G263900.1	Wheat	cytosol	43.86	23.51
TraesCS7B01G161900.2	Wheat	cytosol	43.86	23.51
EES15282	Sorghum	cytosol	44.44	23.46
TraesCS7D01G264800.1	Wheat	cytosol	43.27	23.2
GSMUA_AchrUn_...	Banana	cytosol	32.75	22.31
GSMUA_Achr11P...	Banana	cytosol	36.26	19.14
CDY15693	Canola	cytosol	14.04	12.0
Bra030073.1-P	Field mustard	extracellular	12.87	11.0
GSMUA_Achr5P21620_001	Banana	cytosol	6.43	6.11
PGSC0003DMT400017149	Potato	cytosol	1.17	1.68

Protein Annotations

EnsemblPlants:PGSC0003DMT400017147	EnsemblPlantsGene:PGSC0003DMG401006689	Gene3D:1.20.1300.20	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C65_otubain	PANTHER:PTHR12931	PANTHER:PTHR12931:SF15	PFAM:PF10275	PGSC:PGSC0003DMG401006689
SEG:seg	SUPFAM:SSF54001	TMHMM:TMhelix	UniParc:UPI000294B0A5	UniProt:M1A8M0	MapMan:35.1

Description

Otubain-like cysteine protease [Source:PGSC_GENE;Acc:PGSC0003DMG401006689]

Coordinates

chr4:-:25371576..25373336

Molecular Weight (calculated)

19604.9 Da

IEP (calculated)

4.538

GRAVY (calculated)

-0.356

Length

171 amino acids

Sequence
(BLAST)

001: MQDQEGDVAE AVADAEKETL TSSETDDWKK YRDDDIMQQH SAIQAEQAVK VPFVGDKASH DLQEPLSSLE AEYHLGNSIV LKKIKVLSEQ YAAIRRTRGD
101: GNCFFRSFMF GYLEHILESQ DHNEVQHIKA NIEECKKTLQ SLGYAEFTFE DFFAVTCLSI LLFAITFFHV W

Best Arabidopsis Sequence Match ( AT1G28120.1 )
(BLAST)

001: MQNQIDMVKD EAEVAASISA IKGEEWGNCS SVEDQPSFQE EEAAKVPYVG DKEPLSSLAA EYQSGSPILL EKIKILDSQY IGIRRTRGDG NCFFRSFMFS
101: YLEHILESQD RAEVDRIKVN VEKCRKTLQN LGYTDFTFED FFALFLEQLD DILQGTEESI SYDELVNRSR DQSVSDYIVM FFRFVTAGDI RTRADFFEPF
201: ITGLSNATVD QFCKSSVEPM GEESDHIHIT ALSDALGVAI RVVYLDRSSC DSGGVTVNHH DFVPVGITNE KDEEASAPFI TLLYRPGHYD ILYPKPSCKV
301: SDNVGK

Arabidopsis Description

Ubiquitin thioesterase [Source:UniProtKB/TrEMBL;Acc:K9M9G0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.