Factsheet for GSMUA_AchrUn_randomP01080_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 3
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P21640_001	Banana	cytosol	27.89	68.63
Os08t0537800-01	Rice	cytosol	51.39	59.72
GSMUA_Achr5P21620_001	Banana	cytosol	39.84	55.56
PGSC0003DMT400017149	Potato	cytosol	24.3	51.26
TraesCS7B01G161900.2	Wheat	cytosol	60.16	47.34
TraesCS7A01G263900.1	Wheat	cytosol	59.76	47.02
HORVU7Hr1G055280.2	Barley	cytosol	59.76	47.02
TraesCS7D01G264800.1	Wheat	cytosol	59.36	46.71
Zm00001d049873_P001	Maize	cytosol, extracellular	58.57	46.23
KRH21599	Soybean	cytosol	54.18	45.18
EES15282	Sorghum	cytosol	58.17	45.06
CDY15693	Canola	cytosol	35.86	45.0
KRH10721	Soybean	nucleus	53.78	44.85
Bra030073.1-P	Field mustard	extracellular	35.46	44.5
CDX90125	Canola	cytosol	52.59	44.15
CDY66647	Canola	cytosol	49.4	44.13
CDY11749	Canola	cytosol	52.59	44.0
Solyc04g045480.2.1	Tomato	cytosol	52.59	43.85
VIT_01s0150g00100.t01	Wine grape	cytosol	52.59	43.28
AT1G28120.1	Thale cress	cytosol	52.19	42.81
Bra010902.1-P	Field mustard	cytosol	49.8	39.43
GSMUA_Achr11P...	Banana	cytosol	49.8	38.58
Zm00001d031668_P001	Maize	cytosol	15.54	34.51
PGSC0003DMT400017147	Potato	cytosol	22.31	32.75

Protein Annotations

EnsemblPlants:GSMUA_AchrUn_randomP01080_001	EnsemblPlants:GSMUA_AchrUn_randomT01080_001	EnsemblPlantsGene:GSMUA_AchrUn_randomG01080_001	Gene3D:1.20.1300.20	Gene3D:3.30.200.60	InterPro:IPR003323
InterPro:OTU_dom	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C65_otubain	PANTHER:PTHR12931	PFAM:PF10275	PFscan:PS50802
SUPFAM:SSF54001	UniParc:UPI0002961945	UniProt:M0U5C0	MapMan:19.2.3.1.2.1	MapMan:19.2.4.3.3	:

Description

Ubiquitin thioesterase otubain-like [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG01080_001]

Coordinates

chrchrUn_random:-:3661595..3663938

Molecular Weight (calculated)

28268.8 Da

IEP (calculated)

4.618

GRAVY (calculated)

-0.063

Length

251 amino acids

Sequence
(BLAST)

001: MSVSISMLLE PLSSLVAEFQ SGSPIIQAKI KLLYDNYAAL RRVRKDGNCF YRSFMFSYLE HILETQDTAE VDRILANIEQ CRKAQLVLGD QEYRISEIFS
101: LFIDLLKSVI QENDNSISHE LLLEKSCDQM FSDSVVLFFR MVTSGELRIR AEFFAPFAGV ESTGMAKFCQ DSVEMMGEDC DHVHITALCD ALGVPTRVEC
201: LDQSTSSSGD LTPKHHDFIP MQSSASDAGD PPVPRVTLLY RPGHYDILYP K

Best Arabidopsis Sequence Match ( AT1G28120.1 )
(BLAST)

001: MQNQIDMVKD EAEVAASISA IKGEEWGNCS SVEDQPSFQE EEAAKVPYVG DKEPLSSLAA EYQSGSPILL EKIKILDSQY IGIRRTRGDG NCFFRSFMFS
101: YLEHILESQD RAEVDRIKVN VEKCRKTLQN LGYTDFTFED FFALFLEQLD DILQGTEESI SYDELVNRSR DQSVSDYIVM FFRFVTAGDI RTRADFFEPF
201: ITGLSNATVD QFCKSSVEPM GEESDHIHIT ALSDALGVAI RVVYLDRSSC DSGGVTVNHH DFVPVGITNE KDEEASAPFI TLLYRPGHYD ILYPKPSCKV
301: SDNVGK

Arabidopsis Description

Ubiquitin thioesterase [Source:UniProtKB/TrEMBL;Acc:K9M9G0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.