Factsheet for Zm00001d049873_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d013546_P003
Zm00001d031205_P004
Zm00001d033374_P001
Zm00001d041216_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G28120.1	Zm00001d013546_P003	AT5G42990.1	21798944
AT1G28120.1	Zm00001d031205_P004	AT5G42990.1	21798944
AT1G28120.1	Zm00001d033374_P001	AT5G42990.1	21798944
AT1G28120.1	Zm00001d041216_P001	AT5G42990.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES15282	Sorghum	cytosol	91.19	89.51
Os08t0537800-01	Rice	cytosol	59.75	87.96
GSMUA_Achr5P21640_001	Banana	cytosol	25.79	80.39
HORVU7Hr1G055280.2	Barley	cytosol	79.25	79.0
TraesCS7D01G264800.1	Wheat	cytosol	78.62	78.37
TraesCS7B01G161900.2	Wheat	cytosol	78.62	78.37
TraesCS7A01G263900.1	Wheat	cytosol	78.62	78.37
Zm00001d031668_P001	Maize	cytosol	27.67	77.88
PGSC0003DMT400017149	Potato	cytosol	26.73	71.43
GSMUA_Achr5P21620_001	Banana	cytosol	37.42	66.11
CDX90125	Canola	cytosol	57.55	61.2
KRH10721	Soybean	nucleus	57.55	60.8
KRH21599	Soybean	cytosol	57.23	60.47
VIT_01s0150g00100.t01	Wine grape	cytosol	57.86	60.33
AT1G28120.1	Thale cress	cytosol	57.55	59.8
CDY11749	Canola	cytosol	56.29	59.67
Solyc04g045480.2.1	Tomato	cytosol	56.29	59.47
CDY66647	Canola	cytosol	52.2	59.07
CDY15693	Canola	cytosol	37.11	59.0
GSMUA_AchrUn_...	Banana	cytosol	46.23	58.57
Bra030073.1-P	Field mustard	extracellular	35.85	57.0
Bra010902.1-P	Field mustard	cytosol	54.72	54.89
GSMUA_Achr11P...	Banana	cytosol	46.23	45.37
PGSC0003DMT400017147	Potato	cytosol	23.9	44.44
Zm00001d023337_P010	Maize	cytosol	24.21	19.64
Zm00001d023339_P001	Maize	plastid	23.9	15.73

Protein Annotations

Gene3D:1.20.1300.20	MapMan:19.2.3.1.2.1	MapMan:19.2.4.3.3	Gene3D:3.30.200.60	ProteinID:AQK51503.1	UniProt:B6TM99
EMBL:BT054789	MEROPS:C65.001	EMBL:EU966114	GO:GO:0003674	GO:GO:0003824	GO:GO:0004843
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006464	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0008234
GO:GO:0009987	GO:GO:0016579	GO:GO:0016787	GO:GO:0019538	GO:GO:0019784	GO:GO:0036459
GO:GO:0043130	GO:GO:0071108	InterPro:IPR003323	InterPro:OTU_dom	InterPro:Otubain	PFAM:PF10275
PIRSF:PIRSF013503	PFscan:PS50802	PANTHER:PTHR12931	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C65_otubain	SUPFAM:SSF54001
UniParc:UPI000182E30C	EnsemblPlantsGene:Zm00001d049873	EnsemblPlants:Zm00001d049873_P001	EnsemblPlants:Zm00001d049873_T001	SEG:seg	:

Description

Ubiquitin thioesterase otubain-like

Coordinates

chr4:-:49840791..49846180

Molecular Weight (calculated)

35106.3 Da

IEP (calculated)

4.285

GRAVY (calculated)

-0.297

Length

318 amino acids

Sequence
(BLAST)

001: MGDVPQAPHA AGGGEEWAGP DPNPSPSLGG CSDPVSVELS MGGDYYRACC GEPDPDIPEG PKLPCVGDKE PLSSLAAEFQ SGSPILQEKI KLLGEQYGAL
101: RRTRGDGNCF YRSFMFSYLE HILETQDKAE ADRIMVKIEE CKKTLLSLGY IEFTFEDFFS IFIELLESVL QGHETPIGPE ELLERTRDPQ VSDYVVMFFR
201: FVTSGEIQRR SDFFEPFISG LTNSTVVQFC KASVEPMGEE SDHVHIIALS DALGVPIRVM YLDRSSCDTG NLSVNHHDFI PSANDSEGDA ATTPAPATEK
301: PYITLLYRPG HYDILYPK

Best Arabidopsis Sequence Match ( AT1G28120.1 )
(BLAST)

001: MQNQIDMVKD EAEVAASISA IKGEEWGNCS SVEDQPSFQE EEAAKVPYVG DKEPLSSLAA EYQSGSPILL EKIKILDSQY IGIRRTRGDG NCFFRSFMFS
101: YLEHILESQD RAEVDRIKVN VEKCRKTLQN LGYTDFTFED FFALFLEQLD DILQGTEESI SYDELVNRSR DQSVSDYIVM FFRFVTAGDI RTRADFFEPF
201: ITGLSNATVD QFCKSSVEPM GEESDHIHIT ALSDALGVAI RVVYLDRSSC DSGGVTVNHH DFVPVGITNE KDEEASAPFI TLLYRPGHYD ILYPKPSCKV
301: SDNVGK

Arabidopsis Description

Ubiquitin thioesterase [Source:UniProtKB/TrEMBL;Acc:K9M9G0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.