Factsheet for Zm00001d023339_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU78677	Sorghum	cytosol	39.96	61.86
Zm00001d023337_P010	Maize	cytosol	42.65	52.55
KXG22929	Sorghum	nucleus	52.59	50.9
TraesCS2B01G089100.1	Wheat	nucleus	26.92	43.19
TraesCS2D01G073000.2	Wheat	mitochondrion	33.33	39.36
TraesCS2A01G074100.1	Wheat	mitochondrion	32.71	39.01
HORVU2Hr1G009710.27	Barley	cytosol	33.54	38.76
TraesCS2D01G056000.1	Wheat	cytosol	34.37	37.22
TraesCS2B01G089800.1	Wheat	nucleus	30.23	34.68
TraesCS2D01G056200.1	Wheat	cytosol	33.54	34.32
TraesCS2B01G073500.1	Wheat	cytosol	33.95	34.31
TraesCS2D01G073100.1	Wheat	nucleus	28.36	33.91
TraesCS2B01G078500.1	Wheat	nucleus	28.36	33.83
TraesCS2A01G057400.1	Wheat	cytosol	23.81	33.63
TraesCS2A01G074500.1	Wheat	nucleus	27.12	33.42
TraesCS2A01G074000.1	Wheat	cytosol	30.02	33.1
TraesCS2B01G089000.1	Wheat	cytosol	30.43	32.89
HORVU2Hr1G012520.2	Barley	cytosol, nucleus	28.99	32.41
TraesCS2D01G072900.1	Wheat	cytosol, mitochondrion, nucleus	29.61	32.28
TraesCS2B01G089600.1	Wheat	nucleus	26.92	32.26
HORVU2Hr1G012540.44	Barley	cytosol	26.29	30.17
Zm00001d049873_P001	Maize	cytosol, extracellular	15.73	23.9
Zm00001d031668_P001	Maize	cytosol	4.97	21.24
Os04t0652600-01	Rice	nucleus	17.39	15.33

Protein Annotations

EnsemblPlants:Zm00001d023339_P001	EnsemblPlants:Zm00001d023339_T001	EnsemblPlantsGene:Zm00001d023339	Gene3D:1.20.1300.20	Gene3D:3.30.200.60	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C65_otubain	PANTHER:PTHR12931	PANTHER:PTHR12931:SF18
PFAM:PF10275	ProteinID:AQK39170.1	SEG:seg	SUPFAM:SSF54001	TMHMM:TMhelix	UniParc:UPI0008450928
UniProt:A0A1D6ISX1	MapMan:35.2	:	:	:	:

Description

Ubiquitin thioesterase otubain-like

Coordinates

chr10:+:3664713..3669631

Molecular Weight (calculated)

55680.4 Da

IEP (calculated)

9.968

GRAVY (calculated)

-0.399

Length

483 amino acids

Sequence
(BLAST)

001: MVQQQRSPRR DRSPLLRRHG HRRLPNRLRT SRRRCGAGAG RGRGGAAREE AEAARRDRNS LICRRRFHGR SPVTRLFFMR LDVCLVDDEK PDEFEKENGW
101: GSLFMSDPQV LSMHDPQNLP RYIGRQKCDP ISTQEFFALR HDWLQLLDGK KTYLRGTADS NYADSNFVTP KPLTVAVLCQ ESLSYLVLRG ARKPITQQKF
201: KILNEHYVCF RPMRTDGSQF YRAFLFSYLE NLGKMQGSQA EVTRLMECVA RSKVNFCRLE WNKAYFSNPK AFFSSVVSEF EHLVNSVANG LNADELYKIS
301: VQENSSSRSE DMMLFTMCLF ICSLCNISIW LVLCLLRLLT EVHIRTHEVD YNRELSQNRK EKIKALLHCK KSVRPFDADA DLLEMKALSQ ALGIPLHLAA
401: VDDNPLPDRT VQVKWIDFIP RPGPLGSIRE YYLGPLGSIR QYYLPSATDK HPVLPAENFL LSGRMPLVTI LRTVRATAIL YRK

Best Arabidopsis Sequence Match ( AT1G28120.1 )
(BLAST)

001: MQNQIDMVKD EAEVAASISA IKGEEWGNCS SVEDQPSFQE EEAAKVPYVG DKEPLSSLAA EYQSGSPILL EKIKILDSQY IGIRRTRGDG NCFFRSFMFS
101: YLEHILESQD RAEVDRIKVN VEKCRKTLQN LGYTDFTFED FFALFLEQLD DILQGTEESI SYDELVNRSR DQSVSDYIVM FFRFVTAGDI RTRADFFEPF
201: ITGLSNATVD QFCKSSVEPM GEESDHIHIT ALSDALGVAI RVVYLDRSSC DSGGVTVNHH DFVPVGITNE KDEEASAPFI TLLYRPGHYD ILYPKPSCKV
301: SDNVGK

Arabidopsis Description

Ubiquitin thioesterase [Source:UniProtKB/TrEMBL;Acc:K9M9G0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.