Factsheet for Zm00001d031668_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d013546_P003
Zm00001d031205_P004
Zm00001d033374_P001
Zm00001d041216_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G28120.1	Zm00001d013546_P003	AT5G42990.1	21798944
AT1G28120.1	Zm00001d031205_P004	AT5G42990.1	21798944
AT1G28120.1	Zm00001d033374_P001	AT5G42990.1	21798944
AT1G28120.1	Zm00001d041216_P001	AT5G42990.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P21640_001	Banana	cytosol	37.17	41.18
Zm00001d049873_P001	Maize	cytosol, extracellular	77.88	27.67
EES15282	Sorghum	cytosol	76.11	26.54
HORVU7Hr1G055280.2	Barley	cytosol	65.49	23.2
TraesCS7D01G264800.1	Wheat	cytosol	64.6	22.88
TraesCS7B01G161900.2	Wheat	cytosol	64.6	22.88
TraesCS7A01G263900.1	Wheat	cytosol	63.72	22.57
PGSC0003DMT400017147	Potato	cytosol	32.74	21.64
CDY66647	Canola	cytosol	42.48	17.08
CDX90125	Canola	cytosol	42.48	16.05
AT1G28120.1	Thale cress	cytosol	43.36	16.01
KRH21599	Soybean	cytosol	42.48	15.95
GSMUA_Achr11P...	Banana	cytosol	45.13	15.74
KRH10721	Soybean	nucleus	41.59	15.61
GSMUA_AchrUn_...	Banana	cytosol	34.51	15.54
Bra010902.1-P	Field mustard	cytosol	42.48	15.14
CDY11749	Canola	cytosol	39.82	15.0
VIT_01s0150g00100.t01	Wine grape	cytosol	37.17	13.77
Solyc04g045480.2.1	Tomato	cytosol	35.4	13.29
CDY15693	Canola	cytosol	22.12	12.5
Bra030073.1-P	Field mustard	extracellular	20.35	11.5
Os08t0537800-01	Rice	cytosol	16.81	8.8
Zm00001d023337_P010	Maize	cytosol	21.24	6.12
GSMUA_Achr5P21620_001	Banana	cytosol	8.85	5.56
Zm00001d023339_P001	Maize	plastid	21.24	4.97
PGSC0003DMT400017149	Potato	cytosol	2.65	2.52

Protein Annotations

EnsemblPlants:Zm00001d031668_P001	EnsemblPlants:Zm00001d031668_T001	EnsemblPlantsGene:Zm00001d031668	InterPro:IPR003323	InterPro:OTU_dom	InterPro:Papain_like_cys_pep_sf
InterPro:Peptidase_C65_otubain	PANTHER:PTHR12931	PANTHER:PTHR12931:SF15	PFAM:PF10275	PFscan:PS50802	ProteinID:ONM03420.1
SUPFAM:SSF54001	UniParc:UPI000182E784	UniProt:A0A1D6KKH4	MapMan:35.1	:	:

Description

Ubiquitin thioesterase otubain-like

Coordinates

chr1:-:198133295..198135916

Molecular Weight (calculated)

12135.3 Da

IEP (calculated)

4.629

GRAVY (calculated)

-0.420

Length

113 amino acids

Sequence
(BLAST)

001: MGAGLDPSPS FGGCSDPVLV ELSMGGDYYR ACCGEPDSDI PEGPKLPCVG DKEPLSSSAA EFQSGSPILQ EKIKLLGEQY GALRRARGDG NCFYRSFIYV
101: FLPGTHPRET RQS

Best Arabidopsis Sequence Match ( AT1G28120.1 )
(BLAST)

001: MQNQIDMVKD EAEVAASISA IKGEEWGNCS SVEDQPSFQE EEAAKVPYVG DKEPLSSLAA EYQSGSPILL EKIKILDSQY IGIRRTRGDG NCFFRSFMFS
101: YLEHILESQD RAEVDRIKVN VEKCRKTLQN LGYTDFTFED FFALFLEQLD DILQGTEESI SYDELVNRSR DQSVSDYIVM FFRFVTAGDI RTRADFFEPF
201: ITGLSNATVD QFCKSSVEPM GEESDHIHIT ALSDALGVAI RVVYLDRSSC DSGGVTVNHH DFVPVGITNE KDEEASAPFI TLLYRPGHYD ILYPKPSCKV
301: SDNVGK

Arabidopsis Description

Ubiquitin thioesterase [Source:UniProtKB/TrEMBL;Acc:K9M9G0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.