Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400017147 | Potato | cytosol | 64.71 | 38.6 |
| Zm00001d031668_P001 | Maize | cytosol | 41.18 | 37.17 |
| GSMUA_AchrUn_... | Banana | cytosol | 68.63 | 27.89 |
| Os08t0537800-01 | Rice | cytosol | 56.86 | 26.85 |
| TraesCS7B01G161900.2 | Wheat | cytosol | 81.37 | 26.02 |
| TraesCS7A01G263900.1 | Wheat | cytosol | 81.37 | 26.02 |
| HORVU7Hr1G055280.2 | Barley | cytosol | 81.37 | 26.02 |
| Zm00001d049873_P001 | Maize | cytosol, extracellular | 80.39 | 25.79 |
| TraesCS7D01G264800.1 | Wheat | cytosol | 80.39 | 25.71 |
| EES15282 | Sorghum | cytosol | 79.41 | 25.0 |
| KRH10721 | Soybean | nucleus | 69.61 | 23.59 |
| KRH21599 | Soybean | cytosol | 69.61 | 23.59 |
| AT1G28120.1 | Thale cress | cytosol | 70.59 | 23.53 |
| CDX90125 | Canola | cytosol | 67.65 | 23.08 |
| CDY11749 | Canola | cytosol | 67.65 | 23.0 |
| Solyc04g045480.2.1 | Tomato | cytosol | 66.67 | 22.59 |
| VIT_01s0150g00100.t01 | Wine grape | cytosol | 65.69 | 21.97 |
| Bra010902.1-P | Field mustard | cytosol | 66.67 | 21.45 |
| CDY66647 | Canola | cytosol | 58.82 | 21.35 |
| GSMUA_Achr11P... | Banana | cytosol | 64.71 | 20.37 |
| CDY15693 | Canola | cytosol | 24.51 | 12.5 |
| Bra030073.1-P | Field mustard | extracellular | 19.61 | 10.0 |
| GSMUA_Achr5P21620_001 | Banana | cytosol | 10.78 | 6.11 |
| PGSC0003DMT400017149 | Potato | cytosol | 0.98 | 0.84 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr5P21640_001 | EnsemblPlants:GSMUA_Achr5T21640_001 | EnsemblPlantsGene:GSMUA_Achr5G21640_001 | Gene3D:1.20.1300.20 | InterPro:IPR003323 | InterPro:OTU_dom |
| InterPro:Papain_like_cys_pep_sf | InterPro:Peptidase_C65_otubain | PANTHER:PTHR12931 | PANTHER:PTHR12931:SF15 | PFAM:PF10275 | PFscan:PS50802 |
| SUPFAM:SSF54001 | UniParc:UPI000294D349 | UniProt:M0T0I9 | MapMan:35.1 | : | : |
Description
Ubiquitin thioesterase otubain-like [Source:GMGC_GENE;Acc:GSMUA_Achr5G21640_001]
Coordinates
chr5:-:23744346..23747288
Molecular Weight (calculated)
11814.1 Da
IEP (calculated)
4.389
GRAVY (calculated)
-0.089
Length
102 amino acids
Sequence
(BLAST)
(BLAST)
001: MIDLEPLSSL AIEFQSGSPI LQEKIKLLAE QYAALRRTRG DGNCFYRSFM YSYLEHILET QDKAEVDRIL ANIEQCKKTL QVLGYADFTF EDFFSLSIFS
101: EL
101: EL
001: MQNQIDMVKD EAEVAASISA IKGEEWGNCS SVEDQPSFQE EEAAKVPYVG DKEPLSSLAA EYQSGSPILL EKIKILDSQY IGIRRTRGDG NCFFRSFMFS
101: YLEHILESQD RAEVDRIKVN VEKCRKTLQN LGYTDFTFED FFALFLEQLD DILQGTEESI SYDELVNRSR DQSVSDYIVM FFRFVTAGDI RTRADFFEPF
201: ITGLSNATVD QFCKSSVEPM GEESDHIHIT ALSDALGVAI RVVYLDRSSC DSGGVTVNHH DFVPVGITNE KDEEASAPFI TLLYRPGHYD ILYPKPSCKV
301: SDNVGK
101: YLEHILESQD RAEVDRIKVN VEKCRKTLQN LGYTDFTFED FFALFLEQLD DILQGTEESI SYDELVNRSR DQSVSDYIVM FFRFVTAGDI RTRADFFEPF
201: ITGLSNATVD QFCKSSVEPM GEESDHIHIT ALSDALGVAI RVVYLDRSSC DSGGVTVNHH DFVPVGITNE KDEEASAPFI TLLYRPGHYD ILYPKPSCKV
301: SDNVGK
Arabidopsis Description
Ubiquitin thioesterase [Source:UniProtKB/TrEMBL;Acc:K9M9G0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.