Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- plastid 1
- mitochondrion 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_09s0002g07740.t01 | |
| VIT_09s0002g07790.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G28120.1 | VIT_09s0002g07740.t01 | AT5G42990.1 | 21798944 |
| AT1G28120.1 | VIT_09s0002g07790.t01 | AT5G42990.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400017149 | Potato | cytosol | 28.2 | 72.27 |
| KRH10721 | Soybean | nucleus | 70.16 | 71.1 |
| KRH21599 | Soybean | cytosol | 69.51 | 70.43 |
| Os08t0537800-01 | Rice | cytosol | 49.51 | 69.91 |
| Solyc04g045480.2.1 | Tomato | cytosol | 65.25 | 66.11 |
| GSMUA_Achr5P21640_001 | Banana | cytosol | 21.97 | 65.69 |
| GSMUA_Achr5P21620_001 | Banana | cytosol | 38.36 | 65.0 |
| AT1G28120.1 | Thale cress | cytosol | 63.61 | 63.4 |
| CDX90125 | Canola | cytosol | 61.64 | 62.88 |
| CDY11749 | Canola | cytosol | 61.64 | 62.67 |
| CDY66647 | Canola | cytosol | 56.07 | 60.85 |
| CDY15693 | Canola | cytosol | 38.69 | 59.0 |
| Bra030073.1-P | Field mustard | extracellular | 38.03 | 58.0 |
| Zm00001d049873_P001 | Maize | cytosol, extracellular | 60.33 | 57.86 |
| TraesCS7D01G264800.1 | Wheat | cytosol | 60.0 | 57.37 |
| TraesCS7A01G263900.1 | Wheat | cytosol | 60.0 | 57.37 |
| TraesCS7B01G161900.2 | Wheat | cytosol | 59.67 | 57.05 |
| HORVU7Hr1G055280.2 | Barley | cytosol | 59.67 | 57.05 |
| EES15282 | Sorghum | cytosol | 59.02 | 55.56 |
| Bra010902.1-P | Field mustard | cytosol | 56.72 | 54.57 |
| GSMUA_AchrUn_... | Banana | cytosol | 43.28 | 52.59 |
| PGSC0003DMT400017147 | Potato | cytosol | 28.52 | 50.88 |
| GSMUA_Achr11P... | Banana | cytosol | 43.61 | 41.05 |
| Zm00001d031668_P001 | Maize | cytosol | 13.77 | 37.17 |
Protein Annotations
| Gene3D:1.20.1300.20 | EntrezGene:100262625 | wikigene:100262625 | MapMan:19.2.3.1.2.1 | MapMan:19.2.4.3.3 | Gene3D:3.30.200.60 |
| MEROPS:C65.001 | ProteinID:CBI29258 | ProteinID:CBI29258.3 | UniProt:D7TFI5 | EMBL:FN595770 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004843 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 | GO:GO:0006508 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008233 | GO:GO:0008234 | GO:GO:0009987 | GO:GO:0016579 | GO:GO:0016787 | GO:GO:0019538 |
| GO:GO:0019784 | GO:GO:0036459 | GO:GO:0043130 | GO:GO:0071108 | InterPro:IPR003323 | EntrezGene:LOC100262625 |
| wikigene:LOC100262625 | InterPro:OTU_dom | InterPro:Otubain | PFAM:PF10275 | PIRSF:PIRSF013503 | PFscan:PS50802 |
| PANTHER:PTHR12931 | InterPro:Papain_like_cys_pep_sf | InterPro:Peptidase_C65_otubain | SUPFAM:SSF54001 | TIGR:TC63621 | UniParc:UPI0001BE3385 |
| ArrayExpress:VIT_01s0150g00100 | EnsemblPlantsGene:VIT_01s0150g00100 | EnsemblPlants:VIT_01s0150g00100.t01 | RefSeq:XP_002270583 | RefSeq:XP_002270583.1 | RefSeq:XP_002270583.2 |
| RefSeq:XP_010657332.1 | : | : | : | : | : |
Description
Ubiquitin thioesterase [Source:UniProtKB/TrEMBL;Acc:D7TFI5]
Coordinates
chr1:-:22527469..22544547
Molecular Weight (calculated)
34338.4 Da
IEP (calculated)
4.360
GRAVY (calculated)
-0.279
Length
305 amino acids
Sequence
(BLAST)
(BLAST)
001: MENEEGLQAD GESDPKAPIP VSEVDAWENI RDDDIMQQQS AIRAEEAEKV PFIGDKEPLS VLAAEYESGS PILLKKIKVL GEKYGSIRRT RGDGNCFFRG
101: FMFSYLEHIL ESQDQAEVDR VTTNVEKCRE TLQALGYADF TFEDFFALFL EQLESVVQGK ETSISHDELV IRSRDQSISD YIVMFFRFVT SGEIKRRSEF
201: FEPFILGMTN ATATVEQFCK SSVEPMGEES DHVHIIALSD ALGVPIRVVY LDRSTYDIDH VIVNHHDFIP SAGDLPSAGG GSSETTKPIV TLLYRPGHYD
301: ILYLK
101: FMFSYLEHIL ESQDQAEVDR VTTNVEKCRE TLQALGYADF TFEDFFALFL EQLESVVQGK ETSISHDELV IRSRDQSISD YIVMFFRFVT SGEIKRRSEF
201: FEPFILGMTN ATATVEQFCK SSVEPMGEES DHVHIIALSD ALGVPIRVVY LDRSTYDIDH VIVNHHDFIP SAGDLPSAGG GSSETTKPIV TLLYRPGHYD
301: ILYLK
001: MQNQIDMVKD EAEVAASISA IKGEEWGNCS SVEDQPSFQE EEAAKVPYVG DKEPLSSLAA EYQSGSPILL EKIKILDSQY IGIRRTRGDG NCFFRSFMFS
101: YLEHILESQD RAEVDRIKVN VEKCRKTLQN LGYTDFTFED FFALFLEQLD DILQGTEESI SYDELVNRSR DQSVSDYIVM FFRFVTAGDI RTRADFFEPF
201: ITGLSNATVD QFCKSSVEPM GEESDHIHIT ALSDALGVAI RVVYLDRSSC DSGGVTVNHH DFVPVGITNE KDEEASAPFI TLLYRPGHYD ILYPKPSCKV
301: SDNVGK
101: YLEHILESQD RAEVDRIKVN VEKCRKTLQN LGYTDFTFED FFALFLEQLD DILQGTEESI SYDELVNRSR DQSVSDYIVM FFRFVTAGDI RTRADFFEPF
201: ITGLSNATVD QFCKSSVEPM GEESDHIHIT ALSDALGVAI RVVYLDRSSC DSGGVTVNHH DFVPVGITNE KDEEASAPFI TLLYRPGHYD ILYPKPSCKV
301: SDNVGK
Arabidopsis Description
Ubiquitin thioesterase [Source:UniProtKB/TrEMBL;Acc:K9M9G0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.