Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- plastid 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os03t0681400-01 | |
| Os12t0636800-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G28120.1 | Os03t0681400-01 | AT5G42990.1 | 21798944 |
| AT1G28120.1 | Os12t0636800-01 | AT5G42990.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400017149 | Potato | cytosol | 38.89 | 70.59 |
| GSMUA_Achr5P21620_001 | Banana | cytosol | 54.63 | 65.56 |
| TraesCS7A01G263900.1 | Wheat | cytosol | 89.35 | 60.5 |
| HORVU7Hr1G055280.2 | Barley | cytosol | 88.89 | 60.19 |
| TraesCS7D01G264800.1 | Wheat | cytosol | 88.43 | 59.87 |
| TraesCS7B01G161900.2 | Wheat | cytosol | 88.43 | 59.87 |
| Zm00001d049873_P001 | Maize | cytosol, extracellular | 87.96 | 59.75 |
| EES15282 | Sorghum | cytosol | 86.57 | 57.72 |
| GSMUA_Achr5P21640_001 | Banana | cytosol | 26.85 | 56.86 |
| CDX90125 | Canola | cytosol | 71.3 | 51.51 |
| GSMUA_AchrUn_... | Banana | cytosol | 59.72 | 51.39 |
| Solyc04g045480.2.1 | Tomato | cytosol | 70.83 | 50.83 |
| CDY11749 | Canola | cytosol | 70.37 | 50.67 |
| Bra030073.1-P | Field mustard | extracellular | 46.76 | 50.5 |
| KRH10721 | Soybean | nucleus | 70.37 | 50.5 |
| CDY15693 | Canola | cytosol | 46.3 | 50.0 |
| KRH21599 | Soybean | cytosol | 69.44 | 49.83 |
| CDY66647 | Canola | cytosol | 64.81 | 49.82 |
| VIT_01s0150g00100.t01 | Wine grape | cytosol | 69.91 | 49.51 |
| AT1G28120.1 | Thale cress | cytosol | 68.98 | 48.69 |
| Bra010902.1-P | Field mustard | cytosol | 66.2 | 45.11 |
| GSMUA_Achr11P... | Banana | cytosol | 51.39 | 34.26 |
| PGSC0003DMT400017147 | Potato | cytosol | 23.61 | 29.82 |
| Zm00001d031668_P001 | Maize | cytosol | 8.8 | 16.81 |
| Os04t0652600-01 | Rice | nucleus | 33.33 | 13.14 |
Protein Annotations
| Gene3D:1.20.1300.20 | MapMan:19.2.3.1.2.1 | MapMan:19.2.4.3.3 | Gene3D:3.30.200.60 | ProteinID:BAF24281.1 | ProteinID:BAT06458.1 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004843 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 | GO:GO:0006508 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008233 | GO:GO:0008234 | GO:GO:0009987 | GO:GO:0016579 | GO:GO:0016787 |
| GO:GO:0019538 | GO:GO:0019784 | GO:GO:0036459 | GO:GO:0043130 | GO:GO:0071108 | InterPro:IPR003323 |
| InterPro:OTU_dom | EnsemblPlantsGene:Os08g0537800 | EnsemblPlants:Os08t0537800-01 | InterPro:Otubain | PFAM:PF10275 | PIRSF:PIRSF013503 |
| PFscan:PS50802 | PANTHER:PTHR12931 | InterPro:Papain_like_cys_pep_sf | InterPro:Peptidase_C65_otubain | UniProt:Q0J434 | SUPFAM:SSF54001 |
| UniParc:UPI0000DD95CA | : | : | : | : | : |
Description
Ovarian tumour, otubain domain containing protein. (Os08t0537800-01)
Coordinates
chr8:-:26883126..26885826
Molecular Weight (calculated)
24700.1 Da
IEP (calculated)
4.623
GRAVY (calculated)
-0.236
Length
216 amino acids
Sequence
(BLAST)
(BLAST)
001: YDALRRTRGD GNCFYRSFMF SYLEHILETQ DKAEVERILK KIEQCKKTLA DLGYIEFTFE DFFSIFIDQL ESVLQGHESS IGAEELLERT RDQMVSDYVV
101: MFFRFVTSGE IQRRAEFFEP FISGLTNSTV VQFCKASVEP MGEESDHVHI IALSDALGVP IRVMYLDRSS CDAGNISVNH HDFSPEANSS DGAAAAEKPY
201: ITLLYRPGHY DILYPK
101: MFFRFVTSGE IQRRAEFFEP FISGLTNSTV VQFCKASVEP MGEESDHVHI IALSDALGVP IRVMYLDRSS CDAGNISVNH HDFSPEANSS DGAAAAEKPY
201: ITLLYRPGHY DILYPK
001: MQNQIDMVKD EAEVAASISA IKGEEWGNCS SVEDQPSFQE EEAAKVPYVG DKEPLSSLAA EYQSGSPILL EKIKILDSQY IGIRRTRGDG NCFFRSFMFS
101: YLEHILESQD RAEVDRIKVN VEKCRKTLQN LGYTDFTFED FFALFLEQLD DILQGTEESI SYDELVNRSR DQSVSDYIVM FFRFVTAGDI RTRADFFEPF
201: ITGLSNATVD QFCKSSVEPM GEESDHIHIT ALSDALGVAI RVVYLDRSSC DSGGVTVNHH DFVPVGITNE KDEEASAPFI TLLYRPGHYD ILYPKPSCKV
301: SDNVGK
101: YLEHILESQD RAEVDRIKVN VEKCRKTLQN LGYTDFTFED FFALFLEQLD DILQGTEESI SYDELVNRSR DQSVSDYIVM FFRFVTAGDI RTRADFFEPF
201: ITGLSNATVD QFCKSSVEPM GEESDHIHIT ALSDALGVAI RVVYLDRSSC DSGGVTVNHH DFVPVGITNE KDEEASAPFI TLLYRPGHYD ILYPKPSCKV
301: SDNVGK
Arabidopsis Description
Ubiquitin thioesterase [Source:UniProtKB/TrEMBL;Acc:K9M9G0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.