Factsheet for Bra030073.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
plastid 3
extracellular 5
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	extracellular
Plant-mPloc:	nucleus, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra027470.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G28120.1	Bra027470.1-P	AT5G42990.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15693	Canola	cytosol	82.0	82.0
PGSC0003DMT400017149	Potato	cytosol	39.0	65.55
GSMUA_Achr5P21620_001	Banana	cytosol	52.5	58.33
AT1G28120.1	Thale cress	cytosol	79.0	51.63
Os08t0537800-01	Rice	cytosol	50.5	46.76
Bra010902.1-P	Field mustard	cytosol	66.5	41.96
KRH10721	Soybean	nucleus	63.0	41.86
KRH21599	Soybean	cytosol	62.0	41.2
Solyc04g045480.2.1	Tomato	cytosol	57.5	38.21
VIT_01s0150g00100.t01	Wine grape	cytosol	58.0	38.03
HORVU7Hr1G055280.2	Barley	cytosol	58.5	36.68
TraesCS7A01G263900.1	Wheat	cytosol	58.5	36.68
TraesCS7B01G161900.2	Wheat	cytosol	58.5	36.68
TraesCS7D01G264800.1	Wheat	cytosol	58.5	36.68
Zm00001d049873_P001	Maize	cytosol, extracellular	57.0	35.85
GSMUA_AchrUn_...	Banana	cytosol	44.5	35.46
EES15282	Sorghum	cytosol	57.0	35.19
GSMUA_Achr11P...	Banana	cytosol	42.5	26.23
Zm00001d031668_P001	Maize	cytosol	11.5	20.35
GSMUA_Achr5P21640_001	Banana	cytosol	10.0	19.61
PGSC0003DMT400017147	Potato	cytosol	11.0	12.87

Protein Annotations

EnsemblPlants:Bra030073.1	EnsemblPlants:Bra030073.1-P	EnsemblPlantsGene:Bra030073	Gene3D:1.20.1300.20	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C65_otubain
PANTHER:PTHR12931	PFAM:PF10275	SignalP:SignalP-noTM	SUPFAM:SSF54001	UniParc:UPI0002541130	UniProt:M4EMQ3
MapMan:19.2.3.1.2.1	:	:	:	:	:

Description

AT1G28120 (E=5e-077) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin thioesterase Otubain (InterPro:IPR016615), Ovarian tumour, otubain (InterPro:IPR003323); Has 295 Blast hits to 295 proteins in 98 species: Archae - 0; Bacteria - 0; Metazoa - 150; Fungi - 50; Plants - 47; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).

Coordinates

chrA07:+:6799515..6800514

Molecular Weight (calculated)

22398.7 Da

IEP (calculated)

4.386

GRAVY (calculated)

0.009

Length

200 amino acids

Sequence
(BLAST)

001: MMLLSTMFFL GSITVQEPLS SLAAEYQAGS PILLEKIKMF LEQLDDILLG SDDYEELVNR SRDQSVSDYI VMFFRFVTAG EIRTRAEFFE PFITGLSNST
101: VDHFCKTSVE PMGEESDHIH ITTLSDALGV AIRVVYLDRS SCDSGGVTVN HHDFVPVGTS EKQEEASAPF ITLLYRPGHY DILYPKPSSK VLDNVEKMIV

Best Arabidopsis Sequence Match ( AT1G28120.1 )
(BLAST)

001: MQNQIDMVKD EAEVAASISA IKGEEWGNCS SVEDQPSFQE EEAAKVPYVG DKEPLSSLAA EYQSGSPILL EKIKILDSQY IGIRRTRGDG NCFFRSFMFS
101: YLEHILESQD RAEVDRIKVN VEKCRKTLQN LGYTDFTFED FFALFLEQLD DILQGTEESI SYDELVNRSR DQSVSDYIVM FFRFVTAGDI RTRADFFEPF
201: ITGLSNATVD QFCKSSVEPM GEESDHIHIT ALSDALGVAI RVVYLDRSSC DSGGVTVNHH DFVPVGITNE KDEEASAPFI TLLYRPGHYD ILYPKPSCKV
301: SDNVGK

Arabidopsis Description

Ubiquitin thioesterase [Source:UniProtKB/TrEMBL;Acc:K9M9G0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.