Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX90125 | Canola | cytosol | 83.66 | 85.62 |
| CDY11749 | Canola | cytosol | 82.68 | 84.33 |
| CDY66647 | Canola | cytosol | 72.55 | 79.0 |
| Bra030073.1-P | Field mustard | extracellular | 51.63 | 79.0 |
| CDY15693 | Canola | cytosol | 49.02 | 75.0 |
| Bra010902.1-P | Field mustard | cytosol | 77.45 | 74.76 |
| GSMUA_Achr5P21640_001 | Banana | cytosol | 23.53 | 70.59 |
| Os08t0537800-01 | Rice | cytosol | 48.69 | 68.98 |
| KRH10721 | Soybean | nucleus | 66.67 | 67.77 |
| KRH21599 | Soybean | cytosol | 66.34 | 67.44 |
| PGSC0003DMT400017149 | Potato | cytosol | 25.82 | 66.39 |
| VIT_01s0150g00100.t01 | Wine grape | cytosol | 63.4 | 63.61 |
| Solyc04g045480.2.1 | Tomato | cytosol | 61.44 | 62.46 |
| GSMUA_Achr5P21620_001 | Banana | cytosol | 36.6 | 62.22 |
| Zm00001d049873_P001 | Maize | cytosol, extracellular | 59.8 | 57.55 |
| TraesCS7A01G263900.1 | Wheat | cytosol | 59.48 | 57.05 |
| TraesCS7B01G161900.2 | Wheat | cytosol | 59.48 | 57.05 |
| HORVU7Hr1G055280.2 | Barley | cytosol | 59.15 | 56.74 |
| TraesCS7D01G264800.1 | Wheat | cytosol | 59.15 | 56.74 |
| EES15282 | Sorghum | cytosol | 58.82 | 55.56 |
| GSMUA_AchrUn_... | Banana | cytosol | 42.81 | 52.19 |
| PGSC0003DMT400017147 | Potato | cytosol | 28.1 | 50.29 |
| Zm00001d031668_P001 | Maize | cytosol | 16.01 | 43.36 |
| GSMUA_Achr11P... | Banana | cytosol | 45.1 | 42.59 |
Protein Annotations
| Gene3D:1.20.1300.20 | MapMan:19.2.3.1.2.1 | MapMan:19.2.4.3.3 | Gene3D:3.30.200.60 | EntrezGene:839705 | ProteinID:AAG51478.1 |
| ProteinID:AEE30920.1 | ArrayExpress:AT1G28120 | EnsemblPlantsGene:AT1G28120 | RefSeq:AT1G28120 | TAIR:AT1G28120 | RefSeq:AT1G28120-TAIR-G |
| EnsemblPlants:AT1G28120.1 | TAIR:AT1G28120.1 | EMBL:AY084389 | EMBL:AY136373 | Unigene:At.43774 | EMBL:BT000164 |
| MEROPS:C65.001 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004843 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 | GO:GO:0006508 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008233 | GO:GO:0008234 | GO:GO:0009987 | GO:GO:0016579 |
| GO:GO:0016787 | GO:GO:0019538 | GO:GO:0019784 | GO:GO:0036459 | GO:GO:0043130 | GO:GO:0071108 |
| InterPro:IPR003323 | EMBL:JQ013442 | UniProt:K9M9G0 | RefSeq:NP_564299.1 | InterPro:OTU_dom | InterPro:Otubain |
| PFAM:PF10275 | PIRSF:PIRSF013503 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50802 | PANTHER:PTHR12931 | InterPro:Papain_like_cys_pep_sf |
| InterPro:Peptidase_C65_otubain | UniProt:Q8LG98 | SUPFAM:SSF54001 | UniParc:UPI00000AC2F7 | : | : |
Description
Ubiquitin thioesterase [Source:UniProtKB/TrEMBL;Acc:K9M9G0]
Coordinates
chr1:-:9812930..9815560
Molecular Weight (calculated)
34436.2 Da
IEP (calculated)
4.299
GRAVY (calculated)
-0.311
Length
306 amino acids
Sequence
(BLAST)
(BLAST)
001: MQNQIDMVKD EAEVAASISA IKGEEWGNCS SVEDQPSFQE EEAAKVPYVG DKEPLSSLAA EYQSGSPILL EKIKILDSQY IGIRRTRGDG NCFFRSFMFS
101: YLEHILESQD RAEVDRIKVN VEKCRKTLQN LGYTDFTFED FFALFLEQLD DILQGTEESI SYDELVNRSR DQSVSDYIVM FFRFVTAGDI RTRADFFEPF
201: ITGLSNATVD QFCKSSVEPM GEESDHIHIT ALSDALGVAI RVVYLDRSSC DSGGVTVNHH DFVPVGITNE KDEEASAPFI TLLYRPGHYD ILYPKPSCKV
301: SDNVGK
101: YLEHILESQD RAEVDRIKVN VEKCRKTLQN LGYTDFTFED FFALFLEQLD DILQGTEESI SYDELVNRSR DQSVSDYIVM FFRFVTAGDI RTRADFFEPF
201: ITGLSNATVD QFCKSSVEPM GEESDHIHIT ALSDALGVAI RVVYLDRSSC DSGGVTVNHH DFVPVGITNE KDEEASAPFI TLLYRPGHYD ILYPKPSCKV
301: SDNVGK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.