CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY32969
CDY43593

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G28120.1	CDY32969	AT5G42990.1	21798944
AT1G28120.1	CDY43593	AT5G42990.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra030073.1-P	Field mustard	extracellular	82.0	82.0
PGSC0003DMT400017149	Potato	cytosol	40.0	67.23
CDY66647	Canola	cytosol	81.0	57.65
GSMUA_Achr5P21620_001	Banana	cytosol	50.0	55.56
AT1G28120.1	Thale cress	cytosol	75.0	49.02
CDX90125	Canola	cytosol	70.0	46.82
Os08t0537800-01	Rice	cytosol	50.0	46.3
CDY11749	Canola	cytosol	69.0	46.0
KRH10721	Soybean	nucleus	62.0	41.2
KRH21599	Soybean	cytosol	60.5	40.2
VIT_01s0150g00100.t01	Wine grape	cytosol	59.0	38.69
Solyc04g045480.2.1	Tomato	cytosol	56.5	37.54
HORVU7Hr1G055280.2	Barley	cytosol	59.5	37.3
TraesCS7A01G263900.1	Wheat	cytosol	59.5	37.3
TraesCS7B01G161900.2	Wheat	cytosol	59.5	37.3
TraesCS7D01G264800.1	Wheat	cytosol	59.5	37.3
Zm00001d049873_P001	Maize	cytosol, extracellular	59.0	37.11
EES15282	Sorghum	cytosol	59.0	36.42
GSMUA_AchrUn_...	Banana	cytosol	45.0	35.86
GSMUA_Achr11P...	Banana	cytosol	42.5	26.23
GSMUA_Achr5P21640_001	Banana	cytosol	12.5	24.51
Zm00001d031668_P001	Maize	cytosol	12.5	22.12
PGSC0003DMT400017147	Potato	cytosol	12.0	14.04

Protein Annotations

EnsemblPlants:CDY15693	EnsemblPlantsGene:GSBRNA2T00089911001	Gene3D:1.20.1300.20	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C65_otubain	PANTHER:PTHR12931
PFAM:PF10275	ProteinID:CDY15693	ProteinID:CDY15693.1	SUPFAM:SSF54001	UniParc:UPI0004EEA3F4	UniProt:A0A078FTN9
MapMan:19.2.3.1.2.1	:	:	:	:	:

Description

BnaA07g08640DBnaA07g08640D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FTN9]

Coordinates

chrLK032056:+:527046..528135

Molecular Weight (calculated)

22426.7 Da

IEP (calculated)

4.440

GRAVY (calculated)

-0.025

Length

200 amino acids

Sequence
(BLAST)

001: MMLHSTMFFL GSITVQEPLS SLAAEYQAGS PILLEKIKMF LEQLDNILLG SDDYEELVNR SRDQSVSDYI VMFFRFVTAG EIRTRAEFFE PFITGLSNST
101: VDQFCKTSVE PMGEESDHIH ITTLSDALGV AIRVVYLDRS SCDSGGVTVN HHDFIPVGTS EKQEEASAPF ITLLYRPGHY DILYPKPSSK VLDNVEKMIV

Best Arabidopsis Sequence Match ( AT1G28120.1 )
(BLAST)

001: MQNQIDMVKD EAEVAASISA IKGEEWGNCS SVEDQPSFQE EEAAKVPYVG DKEPLSSLAA EYQSGSPILL EKIKILDSQY IGIRRTRGDG NCFFRSFMFS
101: YLEHILESQD RAEVDRIKVN VEKCRKTLQN LGYTDFTFED FFALFLEQLD DILQGTEESI SYDELVNRSR DQSVSDYIVM FFRFVTAGDI RTRADFFEPF
201: ITGLSNATVD QFCKSSVEPM GEESDHIHIT ALSDALGVAI RVVYLDRSSC DSGGVTVNHH DFVPVGITNE KDEEASAPFI TLLYRPGHYD ILYPKPSCKV
301: SDNVGK

Arabidopsis Description

Ubiquitin thioesterase [Source:UniProtKB/TrEMBL;Acc:K9M9G0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.