Factsheet for TraesCS7A01G263900.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G288800.1
TraesCS4B01G026000.2
TraesCS4D01G023400.1
TraesCS5A01G006200.1
TraesCS5B01G005100.1
TraesCS5D01G006000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G28120.1	TraesCS4A01G288800.1	AT5G42990.1	21798944
AT1G28120.1	TraesCS4B01G026000.2	AT5G42990.1	21798944
AT1G28120.1	TraesCS4D01G023400.1	AT5G42990.1	21798944
AT1G28120.1	TraesCS5A01G006200.1	AT5G42990.1	21798944
AT1G28120.1	TraesCS5B01G005100.1	AT5G42990.1	21798944
AT1G28120.1	TraesCS5D01G006000.1	AT5G42990.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G161900.2	Wheat	cytosol	96.55	96.55
HORVU7Hr1G055280.2	Barley	cytosol	96.55	96.55
TraesCS7D01G264800.1	Wheat	cytosol	96.24	96.24
Os08t0537800-01	Rice	cytosol	60.5	89.35
GSMUA_Achr5P21640_001	Banana	cytosol	26.02	81.37
Zm00001d049873_P001	Maize	cytosol, extracellular	78.37	78.62
EES15282	Sorghum	cytosol	77.12	75.93
PGSC0003DMT400017149	Potato	cytosol	26.65	71.43
GSMUA_Achr5P21620_001	Banana	cytosol	37.62	66.67
Zm00001d031668_P001	Maize	cytosol	22.57	63.72
CDX90125	Canola	cytosol	57.37	61.2
KRH10721	Soybean	nucleus	57.37	60.8
KRH21599	Soybean	cytosol	56.74	60.13
VIT_01s0150g00100.t01	Wine grape	cytosol	57.37	60.0
GSMUA_AchrUn_...	Banana	cytosol	47.02	59.76
CDY11749	Canola	cytosol	56.11	59.67
CDY15693	Canola	cytosol	37.3	59.5
AT1G28120.1	Thale cress	cytosol	57.05	59.48
CDY66647	Canola	cytosol	52.35	59.43
Solyc04g045480.2.1	Tomato	cytosol	55.49	58.8
Bra030073.1-P	Field mustard	extracellular	36.68	58.5
Bra010902.1-P	Field mustard	cytosol	54.23	54.57
PGSC0003DMT400017147	Potato	cytosol	23.51	43.86
GSMUA_Achr11P...	Banana	cytosol	44.51	43.83
TraesCS2A01G074500.1	Wheat	nucleus	29.47	23.98
TraesCS2A01G074100.1	Wheat	mitochondrion	24.76	19.51
TraesCS2A01G057400.1	Wheat	cytosol	17.87	16.67
TraesCS2A01G074000.1	Wheat	cytosol	19.75	14.38

Protein Annotations

Gene3D:1.20.1300.20	MapMan:19.2.3.1.2.1	MapMan:19.2.4.3.3	Gene3D:3.30.200.60	GO:GO:0003674	GO:GO:0003824
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016579	GO:GO:0016787
GO:GO:0019538	InterPro:IPR003323	InterPro:OTU_dom	InterPro:Otubain	PFAM:PF10275	PIRSF:PIRSF013503
PFscan:PS50802	PANTHER:PTHR12931	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C65_otubain	SUPFAM:SSF54001	EnsemblPlantsGene:TraesCS7A01G263900
EnsemblPlants:TraesCS7A01G263900.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr7A:-:262460187..262463972

Molecular Weight (calculated)

35378.5 Da

IEP (calculated)

4.355

GRAVY (calculated)

-0.391

Length

319 amino acids

Sequence
(BLAST)

001: MGDAPPPAPA SLVEGGGSDG AGPDPNSHRL SPETVSVELS MGGDYYHACC GDPDPDPKPE GPQVPYIGNK EPLSALAAEF QSGSPILQEK IKLLGEQYDA
101: LRRTRGDGNC FYRSFMFSYL EHILETQDRA EVERILKNIE QCKKTLSGLG YIEFTFEDFF SMFIEELQNV LQGHETSIGP EELLERTRDQ TTSDYVVMFF
201: RFVTSGEIQR RAEFFEPFIS GLTNSTVVQF CKSSVEPMGE ESDHVHIIAL SDALGVPIRV MYLDRSSCDT GNLSVNHHDF IPAANSSEGD AAMGLNPAEE
301: KPYITLLYRP GHYDILYPK

Best Arabidopsis Sequence Match ( AT1G28120.1 )
(BLAST)

001: MQNQIDMVKD EAEVAASISA IKGEEWGNCS SVEDQPSFQE EEAAKVPYVG DKEPLSSLAA EYQSGSPILL EKIKILDSQY IGIRRTRGDG NCFFRSFMFS
101: YLEHILESQD RAEVDRIKVN VEKCRKTLQN LGYTDFTFED FFALFLEQLD DILQGTEESI SYDELVNRSR DQSVSDYIVM FFRFVTAGDI RTRADFFEPF
201: ITGLSNATVD QFCKSSVEPM GEESDHIHIT ALSDALGVAI RVVYLDRSSC DSGGVTVNHH DFVPVGITNE KDEEASAPFI TLLYRPGHYD ILYPKPSCKV
301: SDNVGK

Arabidopsis Description

Ubiquitin thioesterase [Source:UniProtKB/TrEMBL;Acc:K9M9G0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.