CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH21599	Soybean	cytosol	95.02	95.02
PGSC0003DMT400017149	Potato	cytosol	28.9	73.11
Os08t0537800-01	Rice	cytosol	50.5	70.37
VIT_01s0150g00100.t01	Wine grape	cytosol	71.1	70.16
GSMUA_Achr5P21640_001	Banana	cytosol	23.59	69.61
Solyc04g045480.2.1	Tomato	cytosol	68.44	68.44
CDX90125	Canola	cytosol	67.11	67.56
CDY11749	Canola	cytosol	67.11	67.33
AT1G28120.1	Thale cress	cytosol	67.77	66.67
GSMUA_Achr5P21620_001	Banana	cytosol	39.87	66.67
CDY66647	Canola	cytosol	61.13	65.48
Bra030073.1-P	Field mustard	extracellular	41.86	63.0
CDY15693	Canola	cytosol	41.2	62.0
Bra010902.1-P	Field mustard	cytosol	63.12	59.94
Zm00001d049873_P001	Maize	cytosol, extracellular	60.8	57.55
TraesCS7A01G263900.1	Wheat	cytosol	60.8	57.37
HORVU7Hr1G055280.2	Barley	cytosol	60.47	57.05
TraesCS7B01G161900.2	Wheat	cytosol	60.47	57.05
TraesCS7D01G264800.1	Wheat	cytosol	60.47	57.05
EES15282	Sorghum	cytosol	59.8	55.56
PGSC0003DMT400017147	Potato	cytosol	30.9	54.39
GSMUA_AchrUn_...	Banana	cytosol	44.85	53.78
GSMUA_Achr11P...	Banana	cytosol	44.85	41.67
Zm00001d031668_P001	Maize	cytosol	15.61	41.59

Protein Annotations

Gene3D:1.20.1300.20	EntrezGene:100803170	MapMan:19.2.3.1.2.1	MapMan:19.2.4.3.3	Gene3D:3.30.200.60	EMBL:ACUP02009155
MEROPS:C65.001	EnsemblPlantsGene:GLYMA_15G065800	GO:GO:0003674	GO:GO:0003824	GO:GO:0004843	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464
GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0008234	GO:GO:0009987
GO:GO:0016579	GO:GO:0016787	GO:GO:0019538	GO:GO:0019784	GO:GO:0036459	GO:GO:0043130
GO:GO:0071108	UniProt:I1ME83	InterPro:IPR003323	EnsemblPlants:KRH10721	ProteinID:KRH10721	ProteinID:KRH10721.1
ProteinID:KRH10722.1	InterPro:OTU_dom	InterPro:Otubain	PFAM:PF10275	PIRSF:PIRSF013503	PFscan:PS50802
PANTHER:PTHR12931	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C65_otubain	SUPFAM:SSF54001	UniParc:UPI000233B89D	:

Description

hypothetical protein

Coordinates

chr15:-:5002340..5006288

Molecular Weight (calculated)

34012.2 Da

IEP (calculated)

4.420

GRAVY (calculated)

-0.236

Length

301 amino acids

Sequence
(BLAST)

001: MQSKEAVVED GEIKSVTAVG SEIDGWTNFG DDDIMQQQYT IQAEEAKKVP FVGDKEPLSS LAAEYKLGSP ILLEKIKVLD EQYAAIRRTR GDGNCFFRSF
101: MFSYLEHIME CQDQAEIDRI QANVEKSRKA LQTLGYADLT FEDFFALFLE QLESVIQGKE TSISHEELVL RSRDQSISDY VVMFFRFVTS AEIQKRAEFF
201: EPFILGLTNT TVEQFCKSSV EPMGEESDHM HITALSDALG IPIRVVYLDR SSCDTGGVSV NHHDFMPVAG DLPNASCSSE KNIPFITLLY RPGHYDILYT
301: K

Best Arabidopsis Sequence Match ( AT1G28120.1 )
(BLAST)

001: MQNQIDMVKD EAEVAASISA IKGEEWGNCS SVEDQPSFQE EEAAKVPYVG DKEPLSSLAA EYQSGSPILL EKIKILDSQY IGIRRTRGDG NCFFRSFMFS
101: YLEHILESQD RAEVDRIKVN VEKCRKTLQN LGYTDFTFED FFALFLEQLD DILQGTEESI SYDELVNRSR DQSVSDYIVM FFRFVTAGDI RTRADFFEPF
201: ITGLSNATVD QFCKSSVEPM GEESDHIHIT ALSDALGVAI RVVYLDRSSC DSGGVTVNHH DFVPVGITNE KDEEASAPFI TLLYRPGHYD ILYPKPSCKV
301: SDNVGK

Arabidopsis Description

Ubiquitin thioesterase [Source:UniProtKB/TrEMBL;Acc:K9M9G0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.