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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
PPI

Inferred distinct locusB in Crop

locusBlocations
CDY32969
CDY43593

Inferred from Arabidopsis experimental PPI

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY15693 Canola cytosol 57.65 81.0
AT1G28120.1 Thale cress cytosol 79.0 72.55
CDX90125 Canola cytosol 76.16 71.57
CDY11749 Canola cytosol 75.44 70.67
PGSC0003DMT400017149 Potato cytosol 27.76 65.55
Os08t0537800-01 Rice cytosol 49.82 64.81
GSMUA_Achr5P21620_001 Banana cytosol 40.21 62.78
KRH10721 Soybean nucleus 65.48 61.13
KRH21599 Soybean cytosol 64.41 60.13
GSMUA_Achr5P21640_001 Banana cytosol 21.35 58.82
Solyc04g045480.2.1 Tomato cytosol 60.5 56.48
VIT_01s0150g00100.t01 Wine grape cytosol 60.85 56.07
HORVU7Hr1G055280.2 Barley cytosol 59.43 52.35
TraesCS7A01G263900.1 Wheat cytosol 59.43 52.35
TraesCS7B01G161900.2 Wheat cytosol 59.43 52.35
TraesCS7D01G264800.1 Wheat cytosol 59.43 52.35
Zm00001d049873_P001 Maize cytosol, extracellular 59.07 52.2
EES15282 Sorghum cytosol 58.72 50.93
GSMUA_AchrUn_... Banana cytosol 44.13 49.4
Zm00001d031668_P001 Maize cytosol 17.08 42.48
PGSC0003DMT400017147 Potato cytosol 24.91 40.94
GSMUA_Achr11P... Banana cytosol 45.2 39.2
Protein Annotations
Gene3D:1.20.1300.20MapMan:19.2.3.1.2.1MapMan:19.2.4.3.3Gene3D:3.30.200.60GO:A0A078JMQ6UniProt:A0A078JMQ6
MEROPS:C65.001EnsemblPlants:CDY66647ProteinID:CDY66647ProteinID:CDY66647.1GO:GO:0003674GO:GO:0003824
GO:GO:0004843GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005634GO:GO:0006464GO:GO:0006508GO:GO:0008150GO:GO:0008152GO:GO:0008233
GO:GO:0008234GO:GO:0009987GO:GO:0016579GO:GO:0016787GO:GO:0019538GO:GO:0019784
GO:GO:0036459GO:GO:0043130GO:GO:0071108EnsemblPlantsGene:GSBRNA2T00055491001InterPro:IPR003323InterPro:OTU_dom
InterPro:OtubainPFAM:PF10275PIRSF:PIRSF013503PFscan:PS50802PANTHER:PTHR12931InterPro:Papain_like_cys_pep_sf
InterPro:Peptidase_C65_otubainSUPFAM:SSF54001UniParc:UPI0004EE62F0:::
Description
BnaCnng51760DUbiquitin thioesterase [Source:UniProtKB/TrEMBL;Acc:A0A078JMQ6]
Coordinates
chrLK035385:+:597..2209
Molecular Weight (calculated)
31912.4 Da
IEP (calculated)
4.285
GRAVY (calculated)
-0.199
Length
281 amino acids
Sequence
(BLAST)
001: MHNHNDAVKD DEAVKVGNCF VENVQSFQEE AAKFPYVGDK EPLSSLAAEY QAGSPILLEK IKILDNQYIA IRRTRGDGNC FFRSFMFSYL EHILESQDGA
101: EVDQRLLDFT FEDFFALFLE QLDDILLGSD ESISYEELVY RSRDQSVSDY IVMFFRFVTA GEIRTRAEFF EPFITGLSNS TVDQFCKISV ESMGEESDHI
201: HITALSDALD VAIRVVYLDR SSCDSGGVTV NHHDFVPVGT NEKQEEASAP FITLLYRPGH YDILYPKPSS KVLDNVEKMI V
Best Arabidopsis Sequence Match ( AT1G28120.1 )
(BLAST)
001: MQNQIDMVKD EAEVAASISA IKGEEWGNCS SVEDQPSFQE EEAAKVPYVG DKEPLSSLAA EYQSGSPILL EKIKILDSQY IGIRRTRGDG NCFFRSFMFS
101: YLEHILESQD RAEVDRIKVN VEKCRKTLQN LGYTDFTFED FFALFLEQLD DILQGTEESI SYDELVNRSR DQSVSDYIVM FFRFVTAGDI RTRADFFEPF
201: ITGLSNATVD QFCKSSVEPM GEESDHIHIT ALSDALGVAI RVVYLDRSSC DSGGVTVNHH DFVPVGITNE KDEEASAPFI TLLYRPGHYD ILYPKPSCKV
301: SDNVGK
Arabidopsis Description
Ubiquitin thioesterase [Source:UniProtKB/TrEMBL;Acc:K9M9G0]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.