Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT1G28120.1 | CDY32969 | AT5G42990.1 | 21798944 |
AT1G28120.1 | CDY43593 | AT5G42990.1 | 21798944 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY15693 | Canola | cytosol | 57.65 | 81.0 |
AT1G28120.1 | Thale cress | cytosol | 79.0 | 72.55 |
CDX90125 | Canola | cytosol | 76.16 | 71.57 |
CDY11749 | Canola | cytosol | 75.44 | 70.67 |
PGSC0003DMT400017149 | Potato | cytosol | 27.76 | 65.55 |
Os08t0537800-01 | Rice | cytosol | 49.82 | 64.81 |
GSMUA_Achr5P21620_001 | Banana | cytosol | 40.21 | 62.78 |
KRH10721 | Soybean | nucleus | 65.48 | 61.13 |
KRH21599 | Soybean | cytosol | 64.41 | 60.13 |
GSMUA_Achr5P21640_001 | Banana | cytosol | 21.35 | 58.82 |
Solyc04g045480.2.1 | Tomato | cytosol | 60.5 | 56.48 |
VIT_01s0150g00100.t01 | Wine grape | cytosol | 60.85 | 56.07 |
HORVU7Hr1G055280.2 | Barley | cytosol | 59.43 | 52.35 |
TraesCS7A01G263900.1 | Wheat | cytosol | 59.43 | 52.35 |
TraesCS7B01G161900.2 | Wheat | cytosol | 59.43 | 52.35 |
TraesCS7D01G264800.1 | Wheat | cytosol | 59.43 | 52.35 |
Zm00001d049873_P001 | Maize | cytosol, extracellular | 59.07 | 52.2 |
EES15282 | Sorghum | cytosol | 58.72 | 50.93 |
GSMUA_AchrUn_... | Banana | cytosol | 44.13 | 49.4 |
Zm00001d031668_P001 | Maize | cytosol | 17.08 | 42.48 |
PGSC0003DMT400017147 | Potato | cytosol | 24.91 | 40.94 |
GSMUA_Achr11P... | Banana | cytosol | 45.2 | 39.2 |
Protein Annotations
Gene3D:1.20.1300.20 | MapMan:19.2.3.1.2.1 | MapMan:19.2.4.3.3 | Gene3D:3.30.200.60 | GO:A0A078JMQ6 | UniProt:A0A078JMQ6 |
MEROPS:C65.001 | EnsemblPlants:CDY66647 | ProteinID:CDY66647 | ProteinID:CDY66647.1 | GO:GO:0003674 | GO:GO:0003824 |
GO:GO:0004843 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
GO:GO:0005634 | GO:GO:0006464 | GO:GO:0006508 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008233 |
GO:GO:0008234 | GO:GO:0009987 | GO:GO:0016579 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0019784 |
GO:GO:0036459 | GO:GO:0043130 | GO:GO:0071108 | EnsemblPlantsGene:GSBRNA2T00055491001 | InterPro:IPR003323 | InterPro:OTU_dom |
InterPro:Otubain | PFAM:PF10275 | PIRSF:PIRSF013503 | PFscan:PS50802 | PANTHER:PTHR12931 | InterPro:Papain_like_cys_pep_sf |
InterPro:Peptidase_C65_otubain | SUPFAM:SSF54001 | UniParc:UPI0004EE62F0 | : | : | : |
Description
BnaCnng51760DUbiquitin thioesterase [Source:UniProtKB/TrEMBL;Acc:A0A078JMQ6]
Coordinates
chrLK035385:+:597..2209
Molecular Weight (calculated)
31912.4 Da
IEP (calculated)
4.285
GRAVY (calculated)
-0.199
Length
281 amino acids
Sequence
(BLAST)
(BLAST)
001: MHNHNDAVKD DEAVKVGNCF VENVQSFQEE AAKFPYVGDK EPLSSLAAEY QAGSPILLEK IKILDNQYIA IRRTRGDGNC FFRSFMFSYL EHILESQDGA
101: EVDQRLLDFT FEDFFALFLE QLDDILLGSD ESISYEELVY RSRDQSVSDY IVMFFRFVTA GEIRTRAEFF EPFITGLSNS TVDQFCKISV ESMGEESDHI
201: HITALSDALD VAIRVVYLDR SSCDSGGVTV NHHDFVPVGT NEKQEEASAP FITLLYRPGH YDILYPKPSS KVLDNVEKMI V
101: EVDQRLLDFT FEDFFALFLE QLDDILLGSD ESISYEELVY RSRDQSVSDY IVMFFRFVTA GEIRTRAEFF EPFITGLSNS TVDQFCKISV ESMGEESDHI
201: HITALSDALD VAIRVVYLDR SSCDSGGVTV NHHDFVPVGT NEKQEEASAP FITLLYRPGH YDILYPKPSS KVLDNVEKMI V
001: MQNQIDMVKD EAEVAASISA IKGEEWGNCS SVEDQPSFQE EEAAKVPYVG DKEPLSSLAA EYQSGSPILL EKIKILDSQY IGIRRTRGDG NCFFRSFMFS
101: YLEHILESQD RAEVDRIKVN VEKCRKTLQN LGYTDFTFED FFALFLEQLD DILQGTEESI SYDELVNRSR DQSVSDYIVM FFRFVTAGDI RTRADFFEPF
201: ITGLSNATVD QFCKSSVEPM GEESDHIHIT ALSDALGVAI RVVYLDRSSC DSGGVTVNHH DFVPVGITNE KDEEASAPFI TLLYRPGHYD ILYPKPSCKV
301: SDNVGK
101: YLEHILESQD RAEVDRIKVN VEKCRKTLQN LGYTDFTFED FFALFLEQLD DILQGTEESI SYDELVNRSR DQSVSDYIVM FFRFVTAGDI RTRADFFEPF
201: ITGLSNATVD QFCKSSVEPM GEESDHIHIT ALSDALGVAI RVVYLDRSSC DSGGVTVNHH DFVPVGITNE KDEEASAPFI TLLYRPGHYD ILYPKPSCKV
301: SDNVGK
Arabidopsis Description
Ubiquitin thioesterase [Source:UniProtKB/TrEMBL;Acc:K9M9G0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.