Factsheet for GSMUA_Achr5P21620_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 1
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400017149	Potato	cytosol	47.78	72.27
Os08t0537800-01	Rice	cytosol	65.56	54.63
Bra030073.1-P	Field mustard	extracellular	58.33	52.5
CDY15693	Canola	cytosol	55.56	50.0
Solyc04g045480.2.1	Tomato	cytosol	67.78	40.53
CDY66647	Canola	cytosol	62.78	40.21
KRH10721	Soybean	nucleus	66.67	39.87
GSMUA_AchrUn_...	Banana	cytosol	55.56	39.84
CDY11749	Canola	cytosol	64.44	38.67
KRH21599	Soybean	cytosol	64.44	38.54
VIT_01s0150g00100.t01	Wine grape	cytosol	65.0	38.36
CDX90125	Canola	cytosol	62.78	37.79
HORVU7Hr1G055280.2	Barley	cytosol	66.67	37.62
TraesCS7A01G263900.1	Wheat	cytosol	66.67	37.62
TraesCS7B01G161900.2	Wheat	cytosol	66.67	37.62
TraesCS7D01G264800.1	Wheat	cytosol	66.67	37.62
Zm00001d049873_P001	Maize	cytosol, extracellular	66.11	37.42
AT1G28120.1	Thale cress	cytosol	62.22	36.6
EES15282	Sorghum	cytosol	65.0	36.11
Bra010902.1-P	Field mustard	cytosol	57.22	32.49
GSMUA_Achr11P...	Banana	cytosol	47.78	26.54
GSMUA_Achr5P21640_001	Banana	cytosol	6.11	10.78
Zm00001d031668_P001	Maize	cytosol	5.56	8.85
PGSC0003DMT400017147	Potato	cytosol	6.11	6.43

Protein Annotations

EnsemblPlants:GSMUA_Achr5P21620_001	EnsemblPlants:GSMUA_Achr5T21620_001	EnsemblPlantsGene:GSMUA_Achr5G21620_001	Gene3D:1.20.1300.20	Gene3D:3.30.200.60	InterPro:Papain_like_cys_pep_sf
InterPro:Peptidase_C65_otubain	PANTHER:PTHR12931	PFAM:PF10275	SUPFAM:SSF54001	UniParc:UPI000296E897	UniProt:M0T0I7
MapMan:19.2.3.1.2.1	MapMan:19.2.4.3.3	:	:	:	:

Description

Ubiquitin thioesterase otubain-like [Source:GMGC_GENE;Acc:GSMUA_Achr5G21620_001]

Coordinates

chr5:-:23713557..23718234

Molecular Weight (calculated)

20604.6 Da

IEP (calculated)

5.809

GRAVY (calculated)

-0.086

Length

180 amino acids

Sequence
(BLAST)

001: MFSHWIYEKI ELVYKAHIGY NLNCPFPLIF IEQLESVLQG SQTSISHEEL LRRSCDQSIS DYVVMFFRFV TSGEIRRRAE FFEPFVAGLT NTSVDQFCKA
101: SVEPMGEESD HVHIIALSDA LGVPIRVVYL DRSSCDPSAP TVNHHDFMPT ESSTSNVCLL PRPRVTLLYR PGHYDILYPK

Best Arabidopsis Sequence Match ( AT1G28120.1 )
(BLAST)

001: MQNQIDMVKD EAEVAASISA IKGEEWGNCS SVEDQPSFQE EEAAKVPYVG DKEPLSSLAA EYQSGSPILL EKIKILDSQY IGIRRTRGDG NCFFRSFMFS
101: YLEHILESQD RAEVDRIKVN VEKCRKTLQN LGYTDFTFED FFALFLEQLD DILQGTEESI SYDELVNRSR DQSVSDYIVM FFRFVTAGDI RTRADFFEPF
201: ITGLSNATVD QFCKSSVEPM GEESDHIHIT ALSDALGVAI RVVYLDRSSC DSGGVTVNHH DFVPVGITNE KDEEASAPFI TLLYRPGHYD ILYPKPSCKV
301: SDNVGK

Arabidopsis Description

Ubiquitin thioesterase [Source:UniProtKB/TrEMBL;Acc:K9M9G0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.