CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY32969
CDY43593

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G28120.1	CDY32969	AT5G42990.1	21798944
AT1G28120.1	CDY43593	AT5G42990.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11749	Canola	cytosol	96.99	96.67
Bra010902.1-P	Field mustard	cytosol	92.98	87.7
AT1G28120.1	Thale cress	cytosol	85.62	83.66
CDY66647	Canola	cytosol	71.57	76.16
Os08t0537800-01	Rice	cytosol	51.51	71.3
CDY15693	Canola	cytosol	46.82	70.0
GSMUA_Achr5P21640_001	Banana	cytosol	23.08	67.65
KRH10721	Soybean	nucleus	67.56	67.11
PGSC0003DMT400017149	Potato	cytosol	26.42	66.39
KRH21599	Soybean	cytosol	66.56	66.11
GSMUA_Achr5P21620_001	Banana	cytosol	37.79	62.78
Solyc04g045480.2.1	Tomato	cytosol	62.88	62.46
VIT_01s0150g00100.t01	Wine grape	cytosol	62.88	61.64
Zm00001d049873_P001	Maize	cytosol, extracellular	61.2	57.55
TraesCS7A01G263900.1	Wheat	cytosol	61.2	57.37
TraesCS7B01G161900.2	Wheat	cytosol	61.2	57.37
HORVU7Hr1G055280.2	Barley	cytosol	60.87	57.05
TraesCS7D01G264800.1	Wheat	cytosol	60.87	57.05
EES15282	Sorghum	cytosol	61.2	56.48
GSMUA_AchrUn_...	Banana	cytosol	44.15	52.59
PGSC0003DMT400017147	Potato	cytosol	28.76	50.29
GSMUA_Achr11P...	Banana	cytosol	46.15	42.59
Zm00001d031668_P001	Maize	cytosol	16.05	42.48

Protein Annotations

Gene3D:1.20.1300.20	MapMan:19.2.3.1.2.1	MapMan:19.2.4.3.3	Gene3D:3.30.200.60	GO:A0A078DLR2	MEROPS:C65.001
EnsemblPlants:CDX90125	ProteinID:CDX90125	ProteinID:CDX90125.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016579	GO:GO:0016787	GO:GO:0019538
EnsemblPlantsGene:GSBRNA2T00150646001	InterPro:IPR003323	InterPro:OTU_dom	InterPro:Otubain	PFAM:PF10275	PIRSF:PIRSF013503
PFscan:PS50802	PANTHER:PTHR12931	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C65_otubain	SUPFAM:SSF54001	UniParc:UPI0004EE09D8

Description

BnaA08g18590D

Coordinates

chrLK031862:-:208985..211167

Molecular Weight (calculated)

33604.2 Da

IEP (calculated)

4.216

GRAVY (calculated)

-0.316

Length

299 amino acids

Sequence
(BLAST)

001: MQNQNDTVKD DAELAASMSA EQWGCCSVEE PSFQDDEAAK VPYVGDKEPM SSLSAEYQAG SPILLEKIKV LDSQYVAIRR TRGDGNCFFR SFMFSYLEHI
101: LESQDGAEVD RIKVNVEKCR KNLQNLGYTD FTFEDFFALF LEQLDDILQG GEESISYDEL VNRSRDQSVS DYIVMFFRFV TAGEIKTRAE FFEPFITGLS
201: NTTVDQFCKT SVEPMGEESD HIHITALSDA LGVAIRVMYL DRSSCDTGGG VTVNHHDFVP VGTTNEKEEA SAAAPFITLL YRPGHYDILY PKVLDNVEK

Best Arabidopsis Sequence Match ( AT1G28120.1 )
(BLAST)

001: MQNQIDMVKD EAEVAASISA IKGEEWGNCS SVEDQPSFQE EEAAKVPYVG DKEPLSSLAA EYQSGSPILL EKIKILDSQY IGIRRTRGDG NCFFRSFMFS
101: YLEHILESQD RAEVDRIKVN VEKCRKTLQN LGYTDFTFED FFALFLEQLD DILQGTEESI SYDELVNRSR DQSVSDYIVM FFRFVTAGDI RTRADFFEPF
201: ITGLSNATVD QFCKSSVEPM GEESDHIHIT ALSDALGVAI RVVYLDRSSC DSGGVTVNHH DFVPVGITNE KDEEASAPFI TLLYRPGHYD ILYPKPSCKV
301: SDNVGK

Arabidopsis Description

Ubiquitin thioesterase [Source:UniProtKB/TrEMBL;Acc:K9M9G0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.