Factsheet for Solyc04g045480.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400017149	Potato	cytosol	38.54	97.48
PGSC0003DMT400017147	Potato	cytosol	42.86	75.44
Os08t0537800-01	Rice	cytosol	50.83	70.83
KRH10721	Soybean	nucleus	68.44	68.44
GSMUA_Achr5P21620_001	Banana	cytosol	40.53	67.78
GSMUA_Achr5P21640_001	Banana	cytosol	22.59	66.67
KRH21599	Soybean	cytosol	66.45	66.45
VIT_01s0150g00100.t01	Wine grape	cytosol	66.11	65.25
CDX90125	Canola	cytosol	62.46	62.88
CDY11749	Canola	cytosol	62.46	62.67
AT1G28120.1	Thale cress	cytosol	62.46	61.44
CDY66647	Canola	cytosol	56.48	60.5
Bra030073.1-P	Field mustard	extracellular	38.21	57.5
CDY15693	Canola	cytosol	37.54	56.5
Zm00001d049873_P001	Maize	cytosol, extracellular	59.47	56.29
Bra010902.1-P	Field mustard	cytosol	59.14	56.15
TraesCS7A01G263900.1	Wheat	cytosol	58.8	55.49
TraesCS7B01G161900.2	Wheat	cytosol	58.8	55.49
HORVU7Hr1G055280.2	Barley	cytosol	58.47	55.17
TraesCS7D01G264800.1	Wheat	cytosol	58.47	55.17
EES15282	Sorghum	cytosol	58.8	54.63
GSMUA_AchrUn_...	Banana	cytosol	43.85	52.59
GSMUA_Achr11P...	Banana	cytosol	43.85	40.74
Zm00001d031668_P001	Maize	cytosol	13.29	35.4

Protein Annotations

Gene3D:1.20.1300.20	MapMan:19.2.3.1.2.1	MapMan:19.2.4.3.3	Gene3D:3.30.200.60	MEROPS:C65.001	GO:GO:0003674
GO:GO:0003824	GO:GO:0004843	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152
GO:GO:0008233	GO:GO:0008234	GO:GO:0009987	GO:GO:0016579	GO:GO:0016787	GO:GO:0019538
GO:GO:0019784	GO:GO:0036459	GO:GO:0043130	GO:GO:0071108	InterPro:IPR003323	UniProt:K4BRH8
InterPro:OTU_dom	InterPro:Otubain	PFAM:PF10275	PIRSF:PIRSF013503	PFscan:PS50802	PANTHER:PTHR12931
InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C65_otubain	SUPFAM:SSF54001	EnsemblPlantsGene:Solyc04g045480.2	EnsemblPlants:Solyc04g045480.2.1	UniParc:UPI000276621E
SEG:seg	:	:	:	:	:

Description

Ubiquitin thioesterase [Source:UniProtKB/TrEMBL;Acc:K4BRH8]

Coordinates

chr4:+:33671678..33680750

Molecular Weight (calculated)

34356.1 Da

IEP (calculated)

4.488

GRAVY (calculated)

-0.438

Length

301 amino acids

Sequence
(BLAST)

001: MQDQDVDVDV ADAAKETFTS SETDDWKKYK DDDIMQQHSA IQAEQAVKVP FLGDKEPLSS LEAEYHLGNS IVLEKIKVLS EQYAAIRRTR GDGNCFFRSF
101: MFGYLEHILE SQDHNEVQHI KSNIEECKKT LQSLGYAEFT FEDFFALFLE QLDSVLQGSE DSISHDELLC RSRDPSISDY VVMFFRFVTS GEIRKRSEFF
201: EPFILGLTNT SVEQFCKSAV EPMGEESDHV QITALSDALG VPIRVVYLDR SSCENNSINV NHHDFIPTSR EVGNSDVSKT TNRPSITLLY RPGHYDILYP
301: K

Best Arabidopsis Sequence Match ( AT1G28120.1 )
(BLAST)

001: MQNQIDMVKD EAEVAASISA IKGEEWGNCS SVEDQPSFQE EEAAKVPYVG DKEPLSSLAA EYQSGSPILL EKIKILDSQY IGIRRTRGDG NCFFRSFMFS
101: YLEHILESQD RAEVDRIKVN VEKCRKTLQN LGYTDFTFED FFALFLEQLD DILQGTEESI SYDELVNRSR DQSVSDYIVM FFRFVTAGDI RTRADFFEPF
201: ITGLSNATVD QFCKSSVEPM GEESDHIHIT ALSDALGVAI RVVYLDRSSC DSGGVTVNHH DFVPVGITNE KDEEASAPFI TLLYRPGHYD ILYPKPSCKV
301: SDNVGK

Arabidopsis Description

Ubiquitin thioesterase [Source:UniProtKB/TrEMBL;Acc:K9M9G0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.