Factsheet for TraesCS7D01G264800.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G288800.1
TraesCS4B01G026000.2
TraesCS4D01G023400.1
TraesCS5A01G006200.1
TraesCS5B01G005100.1
TraesCS5D01G006000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G28120.1	TraesCS4A01G288800.1	AT5G42990.1	21798944
AT1G28120.1	TraesCS4B01G026000.2	AT5G42990.1	21798944
AT1G28120.1	TraesCS4D01G023400.1	AT5G42990.1	21798944
AT1G28120.1	TraesCS5A01G006200.1	AT5G42990.1	21798944
AT1G28120.1	TraesCS5B01G005100.1	AT5G42990.1	21798944
AT1G28120.1	TraesCS5D01G006000.1	AT5G42990.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G161900.2	Wheat	cytosol	98.12	98.12
HORVU7Hr1G055280.2	Barley	cytosol	97.81	97.81
TraesCS7A01G263900.1	Wheat	cytosol	96.24	96.24
Os08t0537800-01	Rice	cytosol	59.87	88.43
GSMUA_Achr5P21640_001	Banana	cytosol	25.71	80.39
Zm00001d049873_P001	Maize	cytosol, extracellular	78.37	78.62
EES15282	Sorghum	cytosol	77.43	76.23
PGSC0003DMT400017149	Potato	cytosol	26.65	71.43
GSMUA_Achr5P21620_001	Banana	cytosol	37.62	66.67
Zm00001d031668_P001	Maize	cytosol	22.88	64.6
CDX90125	Canola	cytosol	57.05	60.87
KRH10721	Soybean	nucleus	57.05	60.47
VIT_01s0150g00100.t01	Wine grape	cytosol	57.37	60.0
KRH21599	Soybean	cytosol	56.43	59.8
CDY15693	Canola	cytosol	37.3	59.5
CDY66647	Canola	cytosol	52.35	59.43
GSMUA_AchrUn_...	Banana	cytosol	46.71	59.36
CDY11749	Canola	cytosol	55.8	59.33
AT1G28120.1	Thale cress	cytosol	56.74	59.15
Bra030073.1-P	Field mustard	extracellular	36.68	58.5
Solyc04g045480.2.1	Tomato	cytosol	55.17	58.47
Bra010902.1-P	Field mustard	cytosol	53.92	54.26
GSMUA_Achr11P...	Banana	cytosol	44.83	44.14
PGSC0003DMT400017147	Potato	cytosol	23.2	43.27
TraesCS7D01G327300.1	Wheat	cytosol	25.71	28.87
TraesCS2D01G073100.1	Wheat	nucleus	32.29	25.5
TraesCS2D01G073000.2	Wheat	mitochondrion	25.71	20.05
TraesCS2D01G056000.1	Wheat	cytosol	26.96	19.28
TraesCS2D01G056200.1	Wheat	cytosol	27.27	18.43
TraesCS7D01G327200.1	Wheat	nucleus	23.51	16.59
TraesCS7D01G327500.1	Wheat	cytosol	15.67	15.87
TraesCS2D01G072900.1	Wheat	cytosol, mitochondrion, nucleus	20.06	14.45

Protein Annotations

Gene3D:1.20.1300.20	MapMan:19.2.3.1.2.1	MapMan:19.2.4.3.3	Gene3D:3.30.200.60	GO:GO:0003674	GO:GO:0003824
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016579	GO:GO:0016787
GO:GO:0019538	InterPro:IPR003323	InterPro:OTU_dom	InterPro:Otubain	PFAM:PF10275	PIRSF:PIRSF013503
PFscan:PS50802	PANTHER:PTHR12931	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C65_otubain	SUPFAM:SSF54001	EnsemblPlantsGene:TraesCS7D01G264800
EnsemblPlants:TraesCS7D01G264800.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr7D:-:246023896..246028646

Molecular Weight (calculated)

35459.6 Da

IEP (calculated)

4.355

GRAVY (calculated)

-0.407

Length

319 amino acids

Sequence
(BLAST)

001: MGDAPPPPPA PLVEGGGSDG AGPDPNSHRL SPETVSVELS MGGDYYHACC GDPDPDHKPE GPQVPYIGNK EPLSALAAEF QSGSPILQEK IKLLGEQYDA
101: LRRTRGDGNC FYRSFMFSYL EHILETQDRA EVERILKNIE QCKMTLSGLG YIEFTFEDFF SMFIEELQNV LQGHETSIGP EELLERTRDQ TTSDYVVMFF
201: RFVTSGEIQR RAEFFEPFIS GLTNSTVTQF CKSSVEPMGE ESDHVHIIAL SDALGVPIRV MYLDRSSCDT GNLSVNHHDF IPAANSSEGD AAMGLNPAEE
301: KPYITLLYRP GHYDILYPK

Best Arabidopsis Sequence Match ( AT1G28120.1 )
(BLAST)

001: MQNQIDMVKD EAEVAASISA IKGEEWGNCS SVEDQPSFQE EEAAKVPYVG DKEPLSSLAA EYQSGSPILL EKIKILDSQY IGIRRTRGDG NCFFRSFMFS
101: YLEHILESQD RAEVDRIKVN VEKCRKTLQN LGYTDFTFED FFALFLEQLD DILQGTEESI SYDELVNRSR DQSVSDYIVM FFRFVTAGDI RTRADFFEPF
201: ITGLSNATVD QFCKSSVEPM GEESDHIHIT ALSDALGVAI RVVYLDRSSC DSGGVTVNHH DFVPVGITNE KDEEASAPFI TLLYRPGHYD ILYPKPSCKV
301: SDNVGK

Arabidopsis Description

Ubiquitin thioesterase [Source:UniProtKB/TrEMBL;Acc:K9M9G0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.