CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d003414_P002	Maize	cytosol, mitochondrion, nucleus	78.09	76.16
Os04t0460600-02	Rice	cytosol, mitochondrion, nucleus	67.42	69.97
TraesCS2B01G343600.1	Wheat	nucleus	66.29	66.67
TraesCS2D01G324700.1	Wheat	nucleus	65.73	66.29
TraesCS2A01G338300.1	Wheat	nucleus	65.45	65.63
HORVU2Hr1G080460.8	Barley	plastid	66.29	57.7
EES05316	Sorghum	nucleus	56.74	55.8
EES02626	Sorghum	cytosol	21.63	53.85
EER88807	Sorghum	nucleus	32.3	37.46
EES13494	Sorghum	cytosol, nucleus, plastid	30.34	37.37
EER92328	Sorghum	cytosol	37.36	37.36
EER97754	Sorghum	nucleus	34.83	37.24
EER93792	Sorghum	cytosol, mitochondrion, nucleus	34.27	35.78
EER99125	Sorghum	nucleus	36.52	34.57
OQU82346	Sorghum	cytosol, nucleus, plastid	29.21	33.66
KXG26719	Sorghum	nucleus	27.25	33.45
EES05451	Sorghum	nucleus	28.37	33.44
OQU79579	Sorghum	cytosol, nucleus, peroxisome	30.9	32.93
EES07725	Sorghum	cytosol	27.81	32.67
EES14261	Sorghum	nucleus	29.49	30.79
EES07908	Sorghum	nucleus, peroxisome, plastid	33.43	29.97
KXG28945	Sorghum	cytoskeleton, nucleus, peroxisome	30.9	29.65
OQU89451	Sorghum	cytosol	30.9	29.57
EES17917	Sorghum	cytosol	33.15	29.35
EES02651	Sorghum	nucleus	32.58	29.0
KXG23228	Sorghum	plastid	35.11	28.15
KXG28193	Sorghum	cytosol	21.91	27.86

Protein Annotations

MapMan:15.5.17	Gene3D:3.30.310.150	EntrezGene:8057477	UniProt:C5Y9V2	EnsemblPlants:EES10946	ProteinID:EES10946
ProteinID:EES10946.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003441	InterPro:IPR036093
InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365	PFscan:PS51005	PANTHER:PTHR31744	PANTHER:PTHR31744:SF12
EnsemblPlantsGene:SORBI_3006G107400	SUPFAM:SSF101941	UniParc:UPI0001A86E7F	RefSeq:XP_002446618.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr6:+:47676507..47678459

Molecular Weight (calculated)

38347.6 Da

IEP (calculated)

7.678

GRAVY (calculated)

-0.372

Length

356 amino acids

Sequence
(BLAST)

001: MEQELHRPME LPPGFRFHPT DEELITHYLA RKVADARFAA LAVGEADLNK CEPWDLPSLA KMGEKEWYFF CLKDRKYPTG LRTNRATEAG YWKATGKDKD
101: IFRGNGGKVL VGSKKTLVFY TGRAPKGEKS GWVMHEYRLH GKLHGAIVPP KAAAGSKNEW VLCRVFKKSL VVGGAAAAAP AAGKRGAMEM SKMNDDMAAI
201: SHLPPLMDVS GAGANVNPAA AAHVTCFSDA LEGHQFFNQQ QTPPEADATD HLGLAASSPF LLSGFAHYGP LHHGATSLVQ LLEGSVVYAA AGGGGLPDMS
301: NKQQQQPVPA PPCKVGGERE RLSLSQDTGL TSDVNPEISS SSGAQRFDHD HLCWGY

Best Arabidopsis Sequence Match ( AT5G61430.1 )
(BLAST)

001: METFCGFQKE EEQMDLPPGF RFHPTDEELI THYLHKKVLD TSFSAKAIGE VDLNKSEPWE LPWMAKMGEK EWYFFCVRDR KYPTGLRTNR ATEAGYWKAT
101: GKDKEIYRGK SLVGMKKTLV FYRGRAPKGQ KTNWVMHEYR LEGKFSAHNL PKTAKNEWVI CRVFQKSAGG KKIPISSLIR IGSLGTDFNP SLLPSLTDSS
201: PYNDKTKTEP VYVPCFSNQT DQNQGTTLNC FSSPVLNSIQ ADIFHRIPLY QTQSLQVSMN LQSPVLTQEH SVLHAMIENN RRQSLKTMSV SQETGVSTDM
301: NTDISSDFEF GKRRFDSQED PSSSTGPVDL EPFWNY

Arabidopsis Description

NAC100NAC domain-containing protein 100 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLJ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.