CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89812
KRG94975
KRH18664
KRH31638
KRH69070

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50310.1	KRG89812	AT2G41090.1	17360592
AT3G50310.1	KRG94975	AT2G41090.1	17360592
AT3G50310.1	KRH18664	AT2G41090.1	17360592
AT3G50310.1	KRH31638	AT4G14640.1	17360592
AT3G50310.1	KRH69070	AT4G14640.1	17360592
AT3G50310.1	KRG89812	AT5G21274.1	17360592
AT3G50310.1	KRG94975	AT5G21274.1	17360592
AT3G50310.1	KRH18664	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH57939	Soybean	nucleus	90.91	90.91
KRH74789	Soybean	nucleus	62.17	64.63
KRH66431	Soybean	plastid	65.4	64.08
KRH28462	Soybean	plastid	64.81	63.87
KRH77009	Soybean	nucleus	64.81	63.87
KRH28449	Soybean	plastid	43.7	56.23
AT4G36950.1	Thale cress	plastid	51.61	52.38
PGSC0003DMT400010342	Potato	cytosol, plastid	53.67	50.83
Solyc02g090970.1.1	Tomato	cytosol, nucleus, plasma membrane, plastid	52.49	49.72
PGSC0003DMT400010341	Potato	cytosol	51.61	49.44
CDY12801	Canola	cytosol	50.15	49.42
AT5G67080.1	Thale cress	cytosol	49.56	49.13
AT3G50310.1	Thale cress	cytosol	48.97	48.83
Solyc02g090980.1.1	Tomato	cytosol	50.73	48.73
PGSC0003DMT400065492	Potato	nucleus	50.73	48.6
CDX75628	Canola	plastid	50.44	48.59
CDY01441	Canola	cytosol	49.27	48.55
CDY30595	Canola	cytosol	48.68	48.54
CDY17760	Canola	cytosol	48.68	48.54
Bra036070.1-P	Field mustard	cytosol	48.68	48.54
CDX83120	Canola	cytosol	48.09	48.38
Bra030001.1-P	Field mustard	cytosol	48.09	48.38
PGSC0003DMT400010340	Potato	nucleus	51.03	48.33
Solyc02g090990.1.1	Tomato	cytosol	50.44	48.31
Bra011739.1-P	Field mustard	plastid	50.15	48.31
Bra012131.1-P	Field mustard	cytosol	48.97	48.27
Solyc02g064980.1.1	Tomato	cytosol	50.73	48.19
CDX69280	Canola	plastid	49.85	48.16
VIT_07s0031g00530.t01	Wine grape	mitochondrion	51.61	47.7
KRH66433	Soybean	cytosol, plastid	47.21	46.53
GSMUA_Achr9P21940_001	Banana	cytosol, mitochondrion, peroxisome, plastid	46.92	40.3
KRH55037	Soybean	plasma membrane	33.43	38.0
KRH00952	Soybean	cytosol	32.26	37.93
KRH55299	Soybean	mitochondrion	27.27	37.65
KRH55302	Soybean	plasma membrane, plastid	32.55	37.63
KRH25356	Soybean	cytosol	38.42	37.22
GSMUA_Achr4P13370_001	Banana	cytosol	48.09	34.67
KRH26278	Soybean	cytosol	32.55	33.74
KRH06039	Soybean	cytosol	33.14	33.63
KRH56159	Soybean	cytosol, mitochondrion, plastid	37.83	33.51
KRH22583	Soybean	plastid	38.12	32.66
KRH26765	Soybean	mitochondrion	37.54	32.32
KRG98260	Soybean	mitochondrion	35.19	31.01
KRH36483	Soybean	cytosol, mitochondrion, plasma membrane, plastid	37.54	30.33
KRH30249	Soybean	mitochondrion	35.19	29.2
KRH72707	Soybean	mitochondrion	35.19	25.75
KRH17058	Soybean	cytosol, golgi, mitochondrion, nucleus, plastid	34.9	24.44
KRH10459	Soybean	cytosol	28.45	22.05
KRH42244	Soybean	cytosol	26.98	19.57
KRH58364	Soybean	cytosol, plastid	28.15	19.2
KRH43554	Soybean	nucleus	31.38	17.95
KRH64042	Soybean	nucleus	31.38	17.8
KRH59572	Soybean	nucleus	31.09	17.67
KRH10458	Soybean	cytosol	24.34	17.58
KRH53896	Soybean	nucleus	30.79	17.05
KRH16614	Soybean	mitochondrion	26.69	16.46
KRH53173	Soybean	nucleus	26.69	16.4
KRH16616	Soybean	nucleus	27.57	15.93
KRH64744	Soybean	nucleus	26.39	15.9
KRH05734	Soybean	cytosol, plastid	26.39	15.85
KRH18819	Soybean	nucleus	27.57	15.82
KRG96833	Soybean	cytosol	30.21	15.65
KRH68552	Soybean	cytosol	30.21	15.56
KRG91247	Soybean	nucleus	28.45	15.47
KRH35566	Soybean	nucleus	28.15	15.38
KRH28506	Soybean	plastid	27.86	15.25
KRH76953	Soybean	plastid	27.86	15.01
KRH57740	Soybean	plastid	26.98	14.51
KRH04666	Soybean	plastid	26.69	14.29
KRH15298	Soybean	cytosol	27.27	13.25
KRH51939	Soybean	mitochondrion, plastid	25.51	12.97
KRH61238	Soybean	cytosol, plastid	24.63	12.82
KRG91565	Soybean	cytosol	30.79	11.82
KRH35266	Soybean	nucleus	30.5	11.72
KRH27916	Soybean	cytosol, plastid	28.74	11.61
KRH08892	Soybean	cytosol	30.21	11.47
KRH77558	Soybean	cytosol, plastid	28.74	11.28
KRH38416	Soybean	cytosol, plastid	29.62	11.26
KRH41200	Soybean	cytosol	29.33	9.63
KRH24194	Soybean	cytosol	27.57	6.81
KRH29165	Soybean	cytosol	27.57	6.75

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100798607	MapMan:18.4.2.2	EMBL:ACUP02010458	UniProt:G3ECQ9	EnsemblPlantsGene:GLYMA_17G173000
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464
GO:GO:0006468	GO:GO:0006950	GO:GO:0007049	GO:GO:0007154	GO:GO:0007165	GO:GO:0007346
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538
GO:GO:0023014	GO:GO:0031098	GO:GO:0032147	EMBL:HQ711940	InterPro:IPR000719	EnsemblPlants:KRH04602
ProteinID:KRH04602	ProteinID:KRH04602.1	InterPro:Kinase-like_dom_sf	PFAM:PF00069	PIRSF:PIRSF000654	ScanProsite:PS00107
ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR24361	PANTHER:PTHR24361:SF334	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS
SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	UniParc:UPI000152A19D	:	:

Description

hypothetical protein

Coordinates

chr17:-:17775297..17776803

Molecular Weight (calculated)

38402.1 Da

IEP (calculated)

4.889

GRAVY (calculated)

-0.464

Length

341 amino acids

Sequence
(BLAST)

001: MDWVRGDAVG RGSFATVSLA IPTTNYNQFP SLTVVKSADA QTSCWLRNEK HVLDRLGSCP RIIRCFGDDC SFENGVEYYN LFLEYAAGGS LADELRNHDG
101: RIPEPQAREY TRDIVEGLSH VHKNGFVHCD IKLQNILVFE DGRIKIADFG LAREAGERQG KKSECRGTPM FMSPEQVTGG ECESPADIWA LGCAVVEMVT
201: GKPAWQVENG SSMWSLLLRI GVGQEVPEIP NNLSEDGKDF IEKCFIKDPK KRWSAEMLLK HPFLLNDDTV SFKRVHESPR SHFDFPDWVS SVANSLPSSP
301: EFQEKWGFDD EFCSPEDRLR QLLTVNRPAS WSESDGWSSV R

Best Arabidopsis Sequence Match ( AT4G36950.1 )
(BLAST)

001: MEWIRRETIG HGSFSTVSLA TTSGSSSKAF PSLMAVKSSG VVCSAALRNE RDVLDDLGDC SEIVRCFGEG RTVENGEEIY NLFLEYASGG SLADRIKSSG
101: EALPEFEVRR FTRSIVKGLC HIHGNGFTHC DIKLENVLVF GDGDVKISDF GLAKRRSGEV CVEIRGTPLY MAPESVNHGE FESPADIWAL GCSVVEMSSG
201: KTAWCLEDGV MNNVMSLLVR IGSGDEVPRI PVELSEEGKD FVSKCFVKNA AERWTAEMLL DHPFLAVDDE SGEEDEACSV SPRNPFDFPG WNSVQSPVND
301: SVMFGSLVGS PEERISGLVS EKVPDWSVSC DWVNVR

Arabidopsis Description

MAPKKK21Mitogen-activated protein kinase kinase kinase 21 [Source:UniProtKB/TrEMBL;Acc:Q6K1M3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.